Genidens barbus
White sea catfish
GC content
43.10%
Whole genome
Non-coding
1,139 bp
D-loop 1 bp
Where White sea catfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. White sea catfish has the 316th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,703 bp
- GC skew (G − C) / (G + C)
- −0.321
- AT skew (A − T) / (A + T)
- +0.074
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,703 bp
Protein-coding11,381 bp
12S rRNA952 bp
16S rRNA1,676 bp
All tRNA1,555 bp
D-loop1 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.92% | −0.443 | +0.020 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 44.12% | −0.527 | +0.161 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 41.97% | −0.217 | −0.036 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.82% | −0.287 | +0.030 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 37.50% | −0.524 | +0.143 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.94% | −0.479 | +0.015 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 43.62% | −0.281 | −0.041 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.13% | −0.377 | −0.138 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.12% | −0.313 | −0.018 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.66% | −0.376 | +0.039 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,827 bp | 42.75% | −0.465 | +0.080 | |||||
| ND6NADH dehydrogenase subunit 6 | 513 bp | 45.42% | −0.554 | +0.443 | |||||
| CYTBCytochrome b | 1,138 bp | 44.46% | −0.415 | −0.016 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 47.58% | −0.121 | +0.198 | |||||
| 16S rRNA16S ribosomal RNA | 1,676 bp | 44.63% | −0.136 | +0.252 | |||||
| D-loopControl region (D-loop) | 1 bp | 0.00% | – | +1.000 |
Codon usage
Counts per codon, darker is more frequent3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU108
UUC116
Leu L17.1%
UUA110
UUG11
CUU92
CUC130
CUA279
CUG26
Ile I8.3%
AUU165
AUC151
Met M4.4%
AUA143
AUG26
Val V4.9%
GUU52
GUC34
GUA81
GUG21
Ser S6.2%
UCU41
UCC72
UCA74
UCG6
AGU10
AGC34
Pro P5.7%
CCU40
CCC87
CCA88
CCG0
Thr T7.8%
ACU54
ACC118
ACA120
ACG6
Ala A8.8%
GCU60
GCC161
GCA104
GCG9
Tyr Y3.1%
UAU63
UAC53
His H2.8%
CAU31
CAC76
Gln Q2.5%
CAA91
CAG5
Asn N3.3%
AAU47
AAC77
Lys K2.1%
AAA72
AAG6
Asp D2.1%
GAU32
GAC46
Glu E2.6%
GAA88
GAG10
Cys C0.7%
UGU12
UGC16
Trp W3.2%
UGA107
UGG15
Arg R1.9%
CGU9
CGC14
CGA45
CGG6
Gly G6.4%
GGU37
GGC71
GGA112
GGG22
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_088000.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,022 | 952 bp | + | 47.6% |
| tRNA-Val | Transfer RNA | 1,023 | 1,094 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,095 | 2,770 | 1,676 bp | + | 44.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,771 | 2,845 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,846 | 3,820 | 975 bp | + | 44.9% |
| tRNA-Ile | Transfer RNA | 3,821 | 3,892 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,892 | 3,962 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,962 | 4,031 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,032 | 5,076 | 1,045 bp | + | 44.1% |
| tRNA-Trp | Transfer RNA | 5,077 | 5,148 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,151 | 5,219 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,221 | 5,293 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,324 | 5,389 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,392 | 5,461 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,463 | 7,013 | 1,551 bp | + | 42.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,014 | 7,084 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,089 | 7,157 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,172 | 7,862 | 691 bp | + | 41.8% |
| tRNA-Lys | Transfer RNA | 7,863 | 7,936 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,938 | 8,105 | 168 bp | + | 37.5% |
| ATP6 | Protein-coding gene | 8,096 | 8,779 | 684 bp | + | 40.9% |
| COX3 | Protein-coding gene | 8,779 | 9,562 | 784 bp | + | 43.6% |
| tRNA-Gly | Transfer RNA | 9,563 | 9,635 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,636 | 9,984 | 349 bp | + | 44.1% |
| tRNA-Arg | Transfer RNA | 9,985 | 10,055 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,056 | 10,352 | 297 bp | + | 45.1% |
| ND4 | Protein-coding gene | 10,346 | 11,726 | 1,381 bp | + | 43.7% |
| tRNA-His | Transfer RNA | 11,727 | 11,796 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,797 | 11,863 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,874 | 11,946 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,947 | 13,773 | 1,827 bp | + | 42.8% |
| ND6 | Protein-coding gene | 13,770 | 14,282 | 513 bp | − | 45.4% |
| tRNA-Glu | Transfer RNA | 14,283 | 14,351 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,353 | 15,490 | 1,138 bp | + | 44.5% |
| tRNA-Thr | Transfer RNA | 15,491 | 15,562 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,561 | 15,630 | 70 bp | − | – |
| D-loop | Control region | 15,631 | 15,631 | 1 bp | – | 0.0% |