Girella punctata
Largescale blackfish
GC content
43.35%
Whole genome
Non-coding
908 bp
D-loop 845 bp
Where Largescale blackfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Largescale blackfish has the 1,364th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,518 bp
- GC skew (G − C) / (G + C)
- −0.285
- AT skew (A − T) / (A + T)
- +0.047
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,518 bp
Protein-coding11,407 bp
12S rRNA951 bp
16S rRNA1,700 bp
All tRNA1,552 bp
D-loop845 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.56% | −0.364 | −0.018 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 46.56% | −0.520 | +0.081 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.36% | −0.187 | −0.107 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.39% | −0.238 | +0.012 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 40.48% | −0.500 | +0.100 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 42.46% | −0.359 | −0.140 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.59% | −0.257 | −0.048 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.98% | −0.400 | −0.075 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.458 | −0.072 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.45% | −0.380 | +0.017 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.12% | −0.402 | +0.042 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.10% | −0.396 | +0.407 | |||||
| CYTBCytochrome b | 1,141 bp | 44.61% | −0.371 | −0.060 | |||||
| 12S rRNA12S ribosomal RNA | 951 bp | 46.69% | −0.090 | +0.199 | |||||
| 16S rRNA16S ribosomal RNA | 1,700 bp | 43.18% | −0.112 | +0.219 | |||||
| D-loopControl region (D-loop) | 845 bp | 35.15% | −0.172 | +0.051 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU110
UUC121
Leu L17.2%
UUA121
UUG23
CUU156
CUC139
CUA193
CUG23
Ile I7.2%
AUU168
AUC106
Met M4.8%
AUA139
AUG42
Val V5.4%
GUU50
GUC48
GUA89
GUG20
Ser S6.5%
UCU31
UCC77
UCA74
UCG7
AGU21
AGC38
Pro P5.8%
CCU74
CCC76
CCA63
CCG6
Thr T8.0%
ACU58
ACC118
ACA114
ACG13
Ala A8.7%
GCU68
GCC142
GCA111
GCG11
Tyr Y3.0%
UAU53
UAC61
His H2.8%
CAU38
CAC69
Gln Q2.7%
CAA97
CAG7
Asn N3.2%
AAU48
AAC72
Lys K2.0%
AAA66
AAG9
Asp D2.0%
GAU29
GAC46
Glu E2.6%
GAA85
GAG15
Cys C0.7%
UGU8
UGC17
Trp W3.2%
UGA107
UGG13
Arg R2.0%
CGU12
CGC13
CGA48
CGG3
Gly G6.1%
GGU44
GGC82
GGA73
GGG35
Stop 0.2%
UAA6
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_013137.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,020 | 951 bp | + | 46.7% |
| tRNA-Val | Transfer RNA | 1,021 | 1,092 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,093 | 2,792 | 1,700 bp | + | 43.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,793 | 2,867 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,868 | 3,842 | 975 bp | + | 42.6% |
| tRNA-Ile | Transfer RNA | 3,847 | 3,916 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,916 | 3,986 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,986 | 4,058 | 73 bp | + | – |
| ND2 | Protein-coding gene | 4,059 | 5,104 | 1,046 bp | + | 46.6% |
| tRNA-Trp | Transfer RNA | 5,105 | 5,175 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,177 | 5,245 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,247 | 5,319 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,356 | 5,420 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,421 | 5,490 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,492 | 7,042 | 1,551 bp | + | 42.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,043 | 7,113 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,117 | 7,188 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,196 | 7,886 | 691 bp | + | 41.4% |
| tRNA-Lys | Transfer RNA | 7,887 | 7,960 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,962 | 8,129 | 168 bp | + | 40.5% |
| ATP6 | Protein-coding gene | 8,120 | 8,802 | 683 bp | + | 42.5% |
| COX3 | Protein-coding gene | 8,803 | 9,587 | 785 bp | + | 44.6% |
| tRNA-Gly | Transfer RNA | 9,588 | 9,659 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,660 | 10,008 | 349 bp | + | 43.0% |
| tRNA-Arg | Transfer RNA | 10,009 | 10,077 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,078 | 10,374 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 10,368 | 11,748 | 1,381 bp | + | 43.5% |
| tRNA-His | Transfer RNA | 11,749 | 11,817 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,818 | 11,884 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,890 | 11,962 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,963 | 13,801 | 1,839 bp | + | 43.1% |
| ND6 | Protein-coding gene | 13,798 | 14,319 | 522 bp | − | 43.1% |
| tRNA-Glu | Transfer RNA | 14,320 | 14,388 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,393 | 15,533 | 1,141 bp | + | 44.6% |
| tRNA-Thr | Transfer RNA | 15,534 | 15,605 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,605 | 15,673 | 69 bp | − | – |
| D-loop | Control region | 15,674 | 16,518 | 845 bp | – | 35.2% |