Gobio gobio
Gudgeon
GC content
43.85%
Whole genome
Non-coding
998 bp
D-loop 926 bp
Where Gudgeon sits among 2,335 species
Whole-genome GC content against maximum lifespan. Gudgeon has the 1,719th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,607 bp
- GC skew (G − C) / (G + C)
- −0.202
- AT skew (A − T) / (A + T)
- +0.051
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,607 bp
Protein-coding11,406 bp
12S rRNA951 bp
16S rRNA1,693 bp
All tRNA1,861 bp
D-loop926 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.64% | −0.182 | −0.053 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 47.56% | −0.325 | +0.082 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.71% | −0.168 | −0.061 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.26% | −0.205 | +0.038 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 41.21% | −0.353 | +0.155 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.79% | −0.326 | −0.052 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.90% | −0.216 | −0.019 | |||||
| ND3NADH dehydrogenase subunit 3 | 350 bp | 44.57% | −0.269 | −0.062 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.297 | −0.039 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 43.99% | −0.273 | −0.008 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 41.39% | −0.253 | +0.019 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.79% | −0.322 | +0.413 | |||||
| CYTBCytochrome b | 1,141 bp | 45.22% | −0.264 | −0.069 | |||||
| 12S rRNA12S ribosomal RNA | 951 bp | 49.95% | −0.091 | +0.240 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 43.41% | −0.053 | +0.278 | |||||
| D-loopControl region (D-loop) | 926 bp | 34.02% | −0.194 | −0.002 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU117
UUC114
Leu L16.2%
UUA104
UUG29
CUU127
CUC83
CUA212
CUG63
Ile I7.2%
AUU196
AUC79
Met M4.7%
AUA104
AUG74
Val V6.4%
GUU63
GUC53
GUA99
GUG27
Ser S6.4%
UCU37
UCC61
UCA84
UCG7
AGU14
AGC41
Pro P5.7%
CCU37
CCC65
CCA91
CCG23
Thr T7.7%
ACU46
ACC93
ACA132
ACG22
Ala A8.9%
GCU65
GCC138
GCA117
GCG20
Tyr Y2.9%
UAU59
UAC53
His H2.7%
CAU35
CAC69
Gln Q2.5%
CAA75
CAG20
Asn N3.2%
AAU55
AAC68
Lys K2.1%
AAA64
AAG15
Asp D2.1%
GAU17
GAC64
Glu E2.6%
GAA61
GAG39
Cys C0.7%
UGU10
UGC16
Trp W3.2%
UGA99
UGG21
Arg R2.0%
CGU10
CGC9
CGA44
CGG14
Gly G6.4%
GGU38
GGC52
GGA97
GGG57
Stop 0.2%
UAA5
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_008662.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,020 | 951 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,029 | 1,100 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,101 | 2,793 | 1,693 bp | + | 43.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,794 | 2,869 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,871 | 3,845 | 975 bp | + | 45.6% |
| tRNA-Ile | Transfer RNA | 3,850 | 3,921 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,920 | 3,990 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,992 | 4,060 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,061 | 5,107 | 1,047 bp | + | 47.6% |
| tRNA-Trp | Transfer RNA | 5,106 | 5,177 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,180 | 5,248 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,250 | 5,322 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,353 | 5,420 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,423 | 5,493 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,495 | 7,045 | 1,551 bp | + | 43.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,046 | 7,116 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,120 | 7,191 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,205 | 7,895 | 691 bp | + | 42.3% |
| tRNA-Lys | Transfer RNA | 7,896 | 7,971 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,973 | 8,137 | 165 bp | + | 41.2% |
| ATP6 | Protein-coding gene | 8,131 | 8,814 | 684 bp | + | 40.8% |
| COX3 | Protein-coding gene | 8,814 | 9,597 | 784 bp | + | 44.9% |
| tRNA-Gly | Transfer RNA | 9,298 | 9,668 | 371 bp | + | – |
| ND3 | Protein-coding gene | 9,669 | 10,018 | 350 bp | + | 44.6% |
| tRNA-Arg | Transfer RNA | 10,019 | 10,088 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,089 | 10,385 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,379 | 11,760 | 1,382 bp | + | 44.0% |
| tRNA-His | Transfer RNA | 11,761 | 11,829 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,830 | 11,898 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,900 | 11,972 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,973 | 13,808 | 1,836 bp | + | 41.4% |
| ND6 | Protein-coding gene | 13,805 | 14,326 | 522 bp | − | 45.8% |
| tRNA-Glu | Transfer RNA | 14,327 | 14,395 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,400 | 15,540 | 1,141 bp | + | 45.2% |
| tRNA-Thr | Transfer RNA | 15,541 | 15,612 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,612 | 15,681 | 70 bp | − | – |
| D-loop | Control region | 15,682 | 16,607 | 926 bp | – | 34.0% |