Gobiobotia pappenheimi
Eightbarbel gudgeon
GC content
43.23%
Whole genome
Non-coding
988 bp
D-loop 924 bp
Where Eightbarbel gudgeon sits among 2,335 species
Whole-genome GC content against maximum lifespan. Eightbarbel gudgeon has the 2,234th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,605 bp
- GC skew (G − C) / (G + C)
- −0.216
- AT skew (A − T) / (A + T)
- +0.064
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- questionable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,605 bp
Protein-coding11,404 bp
12S rRNA959 bp
16S rRNA1,693 bp
All tRNA1,561 bp
D-loop924 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.10% | −0.247 | −0.002 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 44.26% | −0.352 | +0.111 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.49% | −0.165 | −0.078 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.98% | −0.192 | +0.036 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 37.58% | −0.452 | +0.146 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.98% | −0.361 | −0.072 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 46.30% | −0.245 | −0.017 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.13% | −0.299 | −0.067 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 47.14% | −0.286 | −0.032 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.48% | −0.230 | +0.042 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 42.21% | −0.329 | +0.050 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.55% | −0.407 | +0.448 | |||||
| CYTBCytochrome b | 1,141 bp | 41.98% | −0.257 | −0.021 | |||||
| 12S rRNA12S ribosomal RNA | 959 bp | 49.01% | −0.081 | +0.252 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 42.76% | −0.052 | +0.245 | |||||
| D-loopControl region (D-loop) | 924 bp | 32.90% | −0.138 | −0.010 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU128
UUC100
Leu L16.2%
UUA111
UUG12
CUU127
CUC73
CUA236
CUG59
Ile I7.3%
AUU181
AUC95
Met M5.0%
AUA130
AUG62
Val V6.2%
GUU65
GUC40
GUA101
GUG31
Ser S6.4%
UCU38
UCC56
UCA86
UCG9
AGU12
AGC41
Pro P5.7%
CCU29
CCC66
CCA95
CCG25
Thr T7.8%
ACU44
ACC100
ACA143
ACG9
Ala A8.9%
GCU66
GCC135
GCA122
GCG14
Tyr Y2.9%
UAU58
UAC52
His H2.7%
CAU25
CAC77
Gln Q2.4%
CAA70
CAG23
Asn N3.3%
AAU45
AAC80
Lys K2.0%
AAA68
AAG10
Asp D2.2%
GAU29
GAC53
Glu E2.7%
GAA71
GAG30
Cys C0.7%
UGU6
UGC20
Trp W3.2%
UGA93
UGG28
Arg R2.0%
CGU14
CGC9
CGA39
CGG16
Gly G6.3%
GGU35
GGC53
GGA93
GGG60
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_032293.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,028 | 959 bp | + | 49.0% |
| tRNA-Val | Transfer RNA | 1,029 | 1,100 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,101 | 2,793 | 1,693 bp | + | 42.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,794 | 2,869 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,870 | 3,844 | 975 bp | + | 44.1% |
| tRNA-Ile | Transfer RNA | 3,848 | 3,919 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,918 | 3,988 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,990 | 4,058 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,059 | 5,104 | 1,046 bp | + | 44.3% |
| tRNA-Trp | Transfer RNA | 5,105 | 5,175 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,179 | 5,247 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,249 | 5,321 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,353 | 5,420 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,423 | 5,493 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,495 | 7,045 | 1,551 bp | + | 44.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,046 | 7,116 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,120 | 7,191 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,205 | 7,895 | 691 bp | + | 43.0% |
| tRNA-Lys | Transfer RNA | 7,896 | 7,971 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,973 | 8,137 | 165 bp | + | 37.6% |
| ATP6 | Protein-coding gene | 8,131 | 8,814 | 684 bp | + | 43.0% |
| COX3 | Protein-coding gene | 8,814 | 9,597 | 784 bp | + | 46.3% |
| tRNA-Gly | Transfer RNA | 9,598 | 9,669 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,670 | 10,018 | 349 bp | + | 44.1% |
| tRNA-Arg | Transfer RNA | 10,019 | 10,088 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,089 | 10,385 | 297 bp | + | 47.1% |
| ND4 | Protein-coding gene | 10,379 | 11,760 | 1,382 bp | + | 42.5% |
| tRNA-His | Transfer RNA | 11,761 | 11,829 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,830 | 11,898 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,900 | 11,972 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,973 | 13,808 | 1,836 bp | + | 42.2% |
| ND6 | Protein-coding gene | 13,805 | 14,326 | 522 bp | − | 46.6% |
| tRNA-Glu | Transfer RNA | 14,327 | 14,395 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,400 | 15,540 | 1,141 bp | + | 42.0% |
| tRNA-Thr | Transfer RNA | 15,541 | 15,612 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,612 | 15,681 | 70 bp | − | – |
| D-loop | Control region | 15,682 | 16,605 | 924 bp | – | 32.9% |