Gymnocanthus detrisus
GC content
47.56%
Whole genome
Non-coding
1,173 bp
Including the D-loop
Where Gymnocanthus detrisus sits among 2,335 species
Whole-genome GC content against maximum lifespan. Gymnocanthus detrisus has the 1,110th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,769 bp
- GC skew (G − C) / (G + C)
- −0.267
- AT skew (A − T) / (A + T)
- +0.019
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- questionable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,769 bp
Protein-coding11,407 bp
12S rRNA945 bp
16S rRNA1,693 bp
All tRNA1,551 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.44% | −0.365 | −0.103 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.04% | −0.446 | −0.047 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.74% | −0.212 | −0.120 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.44% | −0.255 | −0.013 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 50.60% | −0.388 | +0.181 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 49.42% | −0.391 | −0.116 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.94% | −0.286 | −0.074 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 54.16% | −0.302 | −0.213 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.51% | −0.293 | −0.184 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.23% | −0.318 | −0.074 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.36% | −0.385 | +0.012 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 51.92% | −0.365 | +0.410 | |||||
| CYTBCytochrome b | 1,141 bp | 50.92% | −0.356 | −0.079 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 47.73% | −0.091 | +0.227 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.37% | −0.103 | +0.187 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU120
UUC110
Leu L17.3%
UUA62
UUG31
CUU166
CUC182
CUA159
CUG58
Ile I6.6%
AUU117
AUC136
Met M4.0%
AUA76
AUG75
Val V6.2%
GUU58
GUC71
GUA71
GUG36
Ser S6.6%
UCU54
UCC76
UCA49
UCG13
AGU13
AGC48
Pro P5.7%
CCU42
CCC130
CCA36
CCG9
Thr T8.1%
ACU54
ACC140
ACA94
ACG22
Ala A9.2%
GCU65
GCC189
GCA83
GCG12
Tyr Y2.8%
UAU30
UAC78
His H2.8%
CAU29
CAC78
Gln Q2.6%
CAA80
CAG18
Asn N2.9%
AAU26
AAC86
Lys K1.9%
AAA64
AAG8
Asp D2.0%
GAU18
GAC57
Glu E2.6%
GAA75
GAG25
Cys C0.6%
UGU10
UGC14
Trp W3.2%
UGA90
UGG30
Arg R2.0%
CGU11
CGC21
CGA33
CGG12
Gly G6.6%
GGU29
GGC95
GGA54
GGG72
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
37 annotated features in NC_082787.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 47.7% |
| tRNA-Val | Transfer RNA | 1,014 | 1,085 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,778 | 1,693 bp | + | 46.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,779 | 2,852 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,853 | 3,827 | 975 bp | + | 49.4% |
| tRNA-Ile | Transfer RNA | 3,832 | 3,901 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,901 | 3,971 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,971 | 4,039 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,040 | 5,085 | 1,046 bp | + | 49.0% |
| tRNA-Trp | Transfer RNA | 5,086 | 5,156 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,158 | 5,226 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,228 | 5,300 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,404 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,405 | 5,474 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,476 | 7,026 | 1,551 bp | + | 48.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,027 | 7,097 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,101 | 7,173 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,181 | 7,871 | 691 bp | + | 45.4% |
| tRNA-Lys | Transfer RNA | 7,872 | 7,945 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,947 | 8,114 | 168 bp | + | 50.6% |
| ATP6 | Protein-coding gene | 8,105 | 8,788 | 684 bp | + | 49.4% |
| COX3 | Protein-coding gene | 8,788 | 9,572 | 785 bp | + | 49.9% |
| tRNA-Gly | Transfer RNA | 9,573 | 9,645 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,646 | 9,994 | 349 bp | + | 54.2% |
| tRNA-Arg | Transfer RNA | 9,995 | 10,063 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,064 | 10,360 | 297 bp | + | 50.5% |
| ND4 | Protein-coding gene | 10,354 | 11,734 | 1,381 bp | + | 48.2% |
| tRNA-His | Transfer RNA | 11,735 | 11,803 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,804 | 11,871 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,876 | 11,948 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,949 | 13,787 | 1,839 bp | + | 47.4% |
| ND6 | Protein-coding gene | 13,784 | 14,305 | 522 bp | − | 51.9% |
| tRNA-Glu | Transfer RNA | 14,306 | 14,374 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,379 | 15,519 | 1,141 bp | + | 50.9% |
| tRNA-Thr | Transfer RNA | 15,520 | 15,591 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,591 | 15,660 | 70 bp | − | – |