Gymnocanthus herzensteini
GC content
47.50%
Whole genome
Non-coding
1,093 bp
D-loop 1,030 bp
Where Gymnocanthus herzensteini sits among 2,335 species
Whole-genome GC content against maximum lifespan. Gymnocanthus herzensteini has the 1,111th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,691 bp
- GC skew (G − C) / (G + C)
- −0.264
- AT skew (A − T) / (A + T)
- +0.012
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,691 bp
Protein-coding11,407 bp
12S rRNA945 bp
16S rRNA1,694 bp
All tRNA1,552 bp
D-loop1,030 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.95% | −0.355 | −0.123 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.04% | −0.439 | −0.051 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.10% | −0.206 | −0.113 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.15% | −0.263 | −0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 49.41% | −0.398 | +0.176 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 49.12% | −0.387 | −0.121 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.30% | −0.287 | −0.075 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 53.01% | −0.319 | −0.171 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.16% | −0.315 | −0.152 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.86% | −0.322 | −0.106 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.53% | −0.380 | +0.007 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 53.26% | −0.396 | +0.467 | |||||
| CYTBCytochrome b | 1,141 bp | 49.69% | −0.344 | −0.077 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 47.51% | −0.091 | +0.234 | |||||
| 16S rRNA16S ribosomal RNA | 1,694 bp | 46.58% | −0.093 | +0.180 | |||||
| D-loopControl region (D-loop) | 1,030 bp | 35.17% | −0.101 | +0.039 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU120
UUC110
Leu L17.3%
UUA75
UUG32
CUU169
CUC178
CUA147
CUG56
Ile I6.7%
AUU127
AUC129
Met M4.0%
AUA72
AUG79
Val V6.2%
GUU59
GUC69
GUA70
GUG37
Ser S6.7%
UCU50
UCC82
UCA48
UCG13
AGU11
AGC51
Pro P5.7%
CCU43
CCC126
CCA35
CCG13
Thr T8.1%
ACU53
ACC136
ACA98
ACG20
Ala A9.2%
GCU63
GCC196
GCA82
GCG9
Tyr Y2.8%
UAU35
UAC73
His H2.8%
CAU31
CAC75
Gln Q2.6%
CAA81
CAG17
Asn N2.9%
AAU29
AAC82
Lys K1.9%
AAA59
AAG13
Asp D2.0%
GAU21
GAC54
Glu E2.6%
GAA72
GAG28
Cys C0.6%
UGU9
UGC15
Trp W3.2%
UGA92
UGG28
Arg R2.0%
CGU10
CGC23
CGA35
CGG10
Gly G6.6%
GGU31
GGC94
GGA59
GGG66
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_034651.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 47.5% |
| tRNA-Val | Transfer RNA | 1,014 | 1,085 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,779 | 1,694 bp | + | 46.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 50.0% |
| tRNA-Ile | Transfer RNA | 3,833 | 3,902 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,973 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,973 | 4,041 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,042 | 5,087 | 1,046 bp | + | 49.0% |
| tRNA-Trp | Transfer RNA | 5,088 | 5,158 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,160 | 5,228 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,230 | 5,302 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,340 | 5,405 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,406 | 5,475 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,477 | 7,027 | 1,551 bp | + | 48.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,028 | 7,098 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,102 | 7,174 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,182 | 7,872 | 691 bp | + | 45.2% |
| tRNA-Lys | Transfer RNA | 7,873 | 7,946 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,948 | 8,115 | 168 bp | + | 49.4% |
| ATP6 | Protein-coding gene | 8,106 | 8,789 | 684 bp | + | 49.1% |
| COX3 | Protein-coding gene | 8,789 | 9,573 | 785 bp | + | 49.3% |
| tRNA-Gly | Transfer RNA | 9,574 | 9,646 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,647 | 9,995 | 349 bp | + | 53.0% |
| tRNA-Arg | Transfer RNA | 9,996 | 10,064 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,065 | 10,361 | 297 bp | + | 49.2% |
| ND4 | Protein-coding gene | 10,355 | 11,735 | 1,381 bp | + | 47.9% |
| tRNA-His | Transfer RNA | 11,736 | 11,804 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,805 | 11,872 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,877 | 11,949 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,950 | 13,788 | 1,839 bp | + | 47.5% |
| ND6 | Protein-coding gene | 13,785 | 14,306 | 522 bp | − | 53.3% |
| tRNA-Glu | Transfer RNA | 14,307 | 14,375 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,380 | 15,520 | 1,141 bp | + | 49.7% |
| tRNA-Thr | Transfer RNA | 15,521 | 15,592 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,592 | 15,661 | 70 bp | − | – |
| D-loop | Control region | 15,662 | 16,691 | 1,030 bp | – | 35.2% |