Gymnocanthus pistilliger
Threaded sculpin
GC content
48.20%
Whole genome
Non-coding
1,017 bp
Including the D-loop
Where Threaded sculpin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Threaded sculpin has the 1,372nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,617 bp
- GC skew (G − C) / (G + C)
- −0.263
- AT skew (A − T) / (A + T)
- +0.013
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,617 bp
Protein-coding11,407 bp
12S rRNA946 bp
16S rRNA1,695 bp
All tRNA1,552 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 49.64% | −0.364 | −0.108 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 50.29% | −0.441 | −0.050 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.87% | −0.198 | −0.117 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.30% | −0.265 | 0.000 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 50.00% | −0.381 | +0.167 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 48.68% | −0.399 | −0.123 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.68% | −0.246 | −0.104 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 53.58% | −0.305 | −0.235 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.329 | −0.149 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.73% | −0.316 | −0.090 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 48.23% | −0.357 | −0.011 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 54.02% | −0.376 | +0.425 | |||||
| CYTBCytochrome b | 1,141 bp | 51.01% | −0.351 | −0.102 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 49.05% | −0.099 | +0.232 | |||||
| 16S rRNA16S ribosomal RNA | 1,695 bp | 46.73% | −0.096 | +0.181 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU119
UUC111
Leu L17.2%
UUA62
UUG40
CUU179
CUC175
CUA132
CUG68
Ile I6.6%
AUU121
AUC131
Met M3.9%
AUA81
AUG69
Val V6.3%
GUU56
GUC78
GUA68
GUG37
Ser S6.6%
UCU49
UCC82
UCA48
UCG11
AGU11
AGC50
Pro P5.7%
CCU47
CCC121
CCA37
CCG13
Thr T8.1%
ACU46
ACC149
ACA101
ACG11
Ala A9.2%
GCU64
GCC192
GCA84
GCG11
Tyr Y2.8%
UAU22
UAC86
His H2.8%
CAU29
CAC78
Gln Q2.6%
CAA76
CAG22
Asn N2.9%
AAU27
AAC85
Lys K1.9%
AAA61
AAG11
Asp D1.9%
GAU21
GAC53
Glu E2.7%
GAA69
GAG32
Cys C0.6%
UGU10
UGC14
Trp W3.2%
UGA83
UGG37
Arg R2.0%
CGU8
CGC23
CGA37
CGG9
Gly G6.6%
GGU35
GGC94
GGA43
GGG81
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082786.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 49.1% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,781 | 1,695 bp | + | 46.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,782 | 2,855 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,856 | 3,830 | 975 bp | + | 49.6% |
| tRNA-Ile | Transfer RNA | 3,835 | 3,904 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,904 | 3,974 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,974 | 4,043 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,044 | 5,089 | 1,046 bp | + | 50.3% |
| tRNA-Trp | Transfer RNA | 5,090 | 5,160 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,162 | 5,230 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,232 | 5,304 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,342 | 5,407 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,477 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,479 | 7,029 | 1,551 bp | + | 48.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,030 | 7,100 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,104 | 7,176 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,184 | 7,874 | 691 bp | + | 45.3% |
| tRNA-Lys | Transfer RNA | 7,875 | 7,948 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,950 | 8,117 | 168 bp | + | 50.0% |
| ATP6 | Protein-coding gene | 8,108 | 8,791 | 684 bp | + | 48.7% |
| COX3 | Protein-coding gene | 8,791 | 9,575 | 785 bp | + | 49.7% |
| tRNA-Gly | Transfer RNA | 9,576 | 9,648 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,649 | 9,997 | 349 bp | + | 53.6% |
| tRNA-Arg | Transfer RNA | 9,998 | 10,066 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,067 | 10,363 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,357 | 11,737 | 1,381 bp | + | 48.7% |
| tRNA-His | Transfer RNA | 11,738 | 11,806 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,807 | 11,874 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,879 | 11,951 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,952 | 13,790 | 1,839 bp | + | 48.2% |
| ND6 | Protein-coding gene | 13,787 | 14,308 | 522 bp | − | 54.0% |
| tRNA-Glu | Transfer RNA | 14,309 | 14,377 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,382 | 15,522 | 1,141 bp | + | 51.0% |
| tRNA-Thr | Transfer RNA | 15,523 | 15,594 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,594 | 15,663 | 70 bp | − | – |