Gymnocypris eckloni
Yellow River scaleless carp
GC content
44.61%
Whole genome
Non-coding
1,204 bp
D-loop 938 bp
Where Yellow River scaleless carp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Yellow River scaleless carp has the 1,441st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,745 bp
- GC skew (G − C) / (G + C)
- −0.170
- AT skew (A − T) / (A + T)
- +0.021
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,745 bp
Protein-coding11,391 bp
12S rRNA956 bp
16S rRNA1,635 bp
All tRNA1,559 bp
D-loop938 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.69% | −0.226 | −0.110 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.61% | −0.260 | +0.013 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.01% | −0.166 | −0.091 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.26% | −0.219 | +0.043 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 39.39% | −0.262 | +0.080 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 40.06% | −0.241 | −0.063 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.33% | −0.172 | −0.066 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 41.55% | −0.186 | −0.108 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.236 | −0.124 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.94% | −0.207 | −0.038 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 43.86% | −0.240 | −0.023 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.94% | −0.298 | +0.350 | |||||
| CYTBCytochrome b | 1,141 bp | 43.56% | −0.223 | −0.099 | |||||
| 12S rRNA12S ribosomal RNA | 956 bp | 50.11% | −0.044 | +0.187 | |||||
| 16S rRNA16S ribosomal RNA | 1,635 bp | 44.34% | −0.026 | +0.255 | |||||
| D-loopControl region (D-loop) | 938 bp | 36.78% | −0.171 | −0.008 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU124
UUC108
Leu L16.3%
UUA122
UUG33
CUU142
CUC85
CUA158
CUG79
Ile I7.1%
AUU188
AUC80
Met M4.6%
AUA104
AUG69
Val V6.9%
GUU84
GUC34
GUA106
GUG37
Ser S6.3%
UCU42
UCC51
UCA76
UCG17
AGU13
AGC42
Pro P5.5%
CCU44
CCC59
CCA93
CCG14
Thr T7.8%
ACU57
ACC106
ACA106
ACG26
Ala A9.1%
GCU65
GCC145
GCA110
GCG26
Tyr Y3.0%
UAU69
UAC44
His H2.7%
CAU46
CAC56
Gln Q2.6%
CAA79
CAG18
Asn N3.1%
AAU46
AAC70
Lys K2.0%
AAA51
AAG26
Asp D1.9%
GAU24
GAC48
Glu E2.7%
GAA79
GAG24
Cys C0.7%
UGU8
UGC17
Trp W3.1%
UGA88
UGG30
Arg R2.0%
CGU9
CGC13
CGA36
CGG18
Gly G6.6%
GGU35
GGC62
GGA91
GGG62
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_061707.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,025 | 956 bp | + | 50.1% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,122 | 2,756 | 1,635 bp | + | 44.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,782 | 2,857 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 47.7% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,908 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,907 | 3,977 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,980 | 4,048 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,049 | 5,093 | 1,045 bp | + | 48.6% |
| tRNA-Trp | Transfer RNA | 5,094 | 5,164 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,166 | 5,234 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,236 | 5,308 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,342 | 5,407 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,407 | 5,477 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,479 | 7,029 | 1,551 bp | + | 43.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,030 | 7,100 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,104 | 7,175 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,189 | 7,879 | 691 bp | + | 42.3% |
| tRNA-Lys | Transfer RNA | 7,880 | 7,955 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,957 | 8,121 | 165 bp | + | 39.4% |
| ATP6 | Protein-coding gene | 8,115 | 8,798 | 684 bp | + | 40.1% |
| COX3 | Protein-coding gene | 8,798 | 9,582 | 785 bp | + | 44.3% |
| tRNA-Gly | Transfer RNA | 9,583 | 9,654 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,655 | 10,003 | 349 bp | + | 41.6% |
| tRNA-Arg | Transfer RNA | 10,004 | 10,073 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,074 | 10,370 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 10,364 | 11,744 | 1,381 bp | + | 42.9% |
| tRNA-His | Transfer RNA | 11,745 | 11,813 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,814 | 11,882 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,884 | 11,956 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,960 | 13,783 | 1,824 bp | + | 43.9% |
| ND6 | Protein-coding gene | 13,780 | 14,301 | 522 bp | − | 46.9% |
| tRNA-Glu | Transfer RNA | 14,302 | 14,370 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,375 | 15,515 | 1,141 bp | + | 43.6% |
| tRNA-Thr | Transfer RNA | 15,516 | 15,587 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,738 | 15,807 | 70 bp | − | – |
| D-loop | Control region | 15,808 | 16,745 | 938 bp | – | 36.8% |