Gymnocypris firmispinatus
GC content
44.37%
Whole genome
Non-coding
1,084 bp
D-loop 935 bp
Where Gymnocypris firmispinatus sits among 2,335 species
Whole-genome GC content against maximum lifespan. Gymnocypris firmispinatus has the 1,373rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,674 bp
- GC skew (G − C) / (G + C)
- −0.172
- AT skew (A − T) / (A + T)
- +0.019
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,674 bp
Protein-coding11,391 bp
12S rRNA958 bp
16S rRNA1,682 bp
All tRNA1,559 bp
D-loop935 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.67% | −0.226 | −0.100 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 47.85% | −0.252 | +0.002 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.07% | −0.159 | −0.101 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.40% | −0.215 | +0.045 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 40.00% | −0.273 | +0.091 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 39.47% | −0.252 | −0.058 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.84% | −0.176 | −0.062 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.41% | −0.149 | −0.114 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.222 | −0.137 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 43.09% | −0.197 | −0.041 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 43.70% | −0.247 | −0.019 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.08% | −0.283 | +0.351 | |||||
| CYTBCytochrome b | 1,141 bp | 43.82% | −0.216 | −0.101 | |||||
| 12S rRNA12S ribosomal RNA | 958 bp | 50.00% | −0.044 | +0.177 | |||||
| 16S rRNA16S ribosomal RNA | 1,682 bp | 44.41% | −0.038 | +0.257 | |||||
| D-loopControl region (D-loop) | 935 bp | 36.47% | −0.173 | −0.010 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU123
UUC109
Leu L16.3%
UUA117
UUG38
CUU140
CUC85
CUA168
CUG71
Ile I7.1%
AUU189
AUC80
Met M4.6%
AUA109
AUG65
Val V6.8%
GUU79
GUC40
GUA104
GUG36
Ser S6.3%
UCU42
UCC48
UCA77
UCG19
AGU13
AGC42
Pro P5.5%
CCU47
CCC54
CCA95
CCG14
Thr T7.6%
ACU58
ACC101
ACA103
ACG27
Ala A9.2%
GCU64
GCC148
GCA112
GCG27
Tyr Y2.9%
UAU67
UAC44
His H2.7%
CAU48
CAC56
Gln Q2.5%
CAA79
CAG17
Asn N3.1%
AAU47
AAC69
Lys K2.1%
AAA49
AAG29
Asp D1.9%
GAU28
GAC46
Glu E2.7%
GAA77
GAG26
Cys C0.7%
UGU8
UGC17
Trp W3.1%
UGA89
UGG29
Arg R2.0%
CGU12
CGC12
CGA35
CGG16
Gly G6.6%
GGU37
GGC59
GGA86
GGG68
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_056384.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,027 | 958 bp | + | 50.0% |
| tRNA-Val | Transfer RNA | 1,028 | 1,099 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,781 | 1,682 bp | + | 44.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,782 | 2,857 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,859 | 3,833 | 975 bp | + | 46.7% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,908 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,907 | 3,977 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,980 | 4,048 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,049 | 5,093 | 1,045 bp | + | 47.9% |
| tRNA-Trp | Transfer RNA | 5,094 | 5,164 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,166 | 5,234 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,236 | 5,308 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,342 | 5,407 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,407 | 5,477 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,479 | 7,029 | 1,551 bp | + | 43.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,030 | 7,100 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,104 | 7,175 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,189 | 7,879 | 691 bp | + | 42.4% |
| tRNA-Lys | Transfer RNA | 7,880 | 7,955 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,957 | 8,121 | 165 bp | + | 40.0% |
| ATP6 | Protein-coding gene | 8,115 | 8,798 | 684 bp | + | 39.5% |
| COX3 | Protein-coding gene | 8,798 | 9,582 | 785 bp | + | 44.8% |
| tRNA-Gly | Transfer RNA | 9,583 | 9,654 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,655 | 10,003 | 349 bp | + | 42.4% |
| tRNA-Arg | Transfer RNA | 10,004 | 10,073 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,074 | 10,370 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 10,364 | 11,744 | 1,381 bp | + | 43.1% |
| tRNA-His | Transfer RNA | 11,745 | 11,813 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,814 | 11,882 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,884 | 11,956 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,960 | 13,783 | 1,824 bp | + | 43.7% |
| ND6 | Protein-coding gene | 13,780 | 14,301 | 522 bp | − | 48.1% |
| tRNA-Glu | Transfer RNA | 14,302 | 14,370 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,375 | 15,515 | 1,141 bp | + | 43.8% |
| tRNA-Thr | Transfer RNA | 15,516 | 15,587 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,670 | 15,739 | 70 bp | − | – |
| D-loop | Control region | 15,740 | 16,674 | 935 bp | – | 36.5% |