MitoAge

Hemiechinus auritus

Long-eared hedgehog

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Maximum lifespan
7.6 yr
AnAge record
mtDNA size
17,283 bp
RefSeq NC_005033.1
GC content
30.90%
Whole genome
Non-coding
1,885 bp
D-loop 1,813 bp

Where Long-eared hedgehog sits among 2,335 species

Whole-genome GC content against maximum lifespan. Long-eared hedgehog has the 1,797th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Long-eared hedgehog
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,283 bp
GC skew (G − C) / (G + C)
−0.241
AT skew (A − T) / (A + T)
+0.019

Life history

Maximum lifespan
7.6 years
Adult weight
342 g
Birth weight
10 g
Basal metabolic rate
0.845 W
Body temperature
33.8 °C
Female sexual maturity
213 days
Gestation or incubation
39 days
Litter or clutch size
4
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02586)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome17,283 bp
Protein-coding11,340 bp
12S rRNA978 bp
16S rRNA1,580 bp
All tRNA1,508 bp
D-loop1,813 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1954 bp32.4%37.0%10.7%19.9%30.61%−0.301−0.066
ND2NADH dehydrogenase subunit 21,044 bp37.4%36.9%7.5%18.3%25.77%−0.420+0.006
COX1Cytochrome c oxidase subunit I1,545 bp29.4%35.0%15.6%20.1%35.66%−0.125−0.087
COX2Cytochrome c oxidase subunit II684 bp32.6%35.5%12.1%19.7%31.87%−0.239−0.043
ATP8ATP synthase F0 subunit 8204 bp37.3%39.2%5.9%17.6%23.53%−0.500−0.026
ATP6ATP synthase F0 subunit 6681 bp33.9%36.9%9.1%20.1%29.22%−0.377−0.041
COX3Cytochrome c oxidase subunit III784 bp29.1%34.7%14.2%22.1%36.22%−0.218−0.088
ND3NADH dehydrogenase subunit 3348 bp33.3%36.5%11.8%18.4%30.17%−0.219−0.045
ND4LNADH dehydrogenase subunit 4L297 bp32.7%41.4%10.8%15.2%25.93%−0.169−0.118
ND4NADH dehydrogenase subunit 41,378 bp35.6%37.9%8.7%17.8%26.49%−0.342−0.031
ND5NADH dehydrogenase subunit 51,815 bp36.0%34.9%9.5%19.6%29.09%−0.348+0.016
ND6NADH dehydrogenase subunit 6534 bp45.1%25.5%6.7%22.7%29.40%−0.541+0.279
CYTBCytochrome b1,140 bp31.8%34.1%11.1%23.0%34.04%−0.351−0.035
12S rRNA12S ribosomal RNA978 bp37.3%27.0%16.6%19.1%35.69%−0.072+0.161
16S rRNA16S ribosomal RNA1,580 bp38.7%28.6%15.8%16.8%32.66%−0.031+0.150
D-loopControl region (D-loop)1,813 bp38.6%34.3%9.3%17.8%27.08%−0.312+0.059

Codon usage

Counts per codon, darker is more frequent

3,802 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%
UUU180
UUC65
Leu L15.3%
UUA295
UUG13
CUU89
CUC38
CUA142
CUG4
Ile I10.0%
AUU304
AUC76
Met M7.7%
AUA269
AUG25
Val V4.1%
GUU49
GUC15
GUA84
GUG7
Ser S7.5%
UCU77
UCC31
UCA114
UCG3
AGU40
AGC22
Pro P4.6%
CCU73
CCC37
CCA62
CCG1
Thr T7.2%
ACU92
ACC40
ACA139
ACG4
Ala A6.1%
GCU88
GCC57
GCA83
GCG4
Tyr Y3.9%
UAU110
UAC39
His H2.7%
CAU63
CAC38
Gln Q2.1%
CAA76
CAG2
Asn N4.7%
AAU139
AAC41
Lys K2.7%
AAA98
AAG4
Asp D1.9%
GAU44
GAC27
Glu E2.5%
GAA86
GAG8
Cys C0.8%
UGU23
UGC8
Trp W2.6%
UGA97
UGG2
Arg R1.6%
CGU12
CGC8
CGA41
CGG0
Gly G5.3%
GGU52
GGC47
GGA92
GGG12
Stop 0.3%
UAA10
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_005033.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (30.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16565 bp+–
12S rRNARibosomal RNA691,046978 bp+35.7%
tRNA-ValTransfer RNA1,0461,11267 bp+–
16S rRNARibosomal RNA1,1142,6931,580 bp+32.7%
tRNA-Leu (UUR)Transfer RNA2,6942,76875 bp+–
ND1Protein-coding gene2,7703,723954 bp+30.6%
tRNA-IleTransfer RNA3,7233,79169 bp+–
tRNA-GlnTransfer RNA3,7893,86173 bp−–
tRNA-MetTransfer RNA3,8613,92969 bp+–
ND2Protein-coding gene3,9334,9761,044 bp+25.8%
tRNA-TrpTransfer RNA4,9785,04669 bp+–
tRNA-AlaTransfer RNA5,0515,11969 bp−–
tRNA-AsnTransfer RNA5,1215,19373 bp−–
tRNA-CysTransfer RNA5,2295,29668 bp−–
tRNA-TyrTransfer RNA5,2985,36568 bp−–
COX1Protein-coding gene5,3676,9111,545 bp+35.7%
tRNA-Ser (UCN)Transfer RNA6,9076,97973 bp−–
tRNA-AspTransfer RNA6,9887,05366 bp+–
COX2Protein-coding gene7,0567,739684 bp+31.9%
tRNA-LysTransfer RNA7,7417,80565 bp+–
ATP8Protein-coding gene7,8078,010204 bp+23.5%
ATP6Protein-coding gene7,9688,648681 bp+29.2%
COX3Protein-coding gene8,6489,431784 bp+36.2%
tRNA-GlyTransfer RNA9,4329,50574 bp+–
ND3Protein-coding gene9,5069,853348 bp+30.2%
tRNA-ArgTransfer RNA9,8539,92169 bp+–
ND4LProtein-coding gene9,92210,218297 bp+25.9%
ND4Protein-coding gene10,21211,5891,378 bp+26.5%
tRNA-HisTransfer RNA11,59011,65566 bp+–
tRNA-Ser (AGY)Transfer RNA11,65611,71560 bp+–
tRNA-Leu (CUN)Transfer RNA11,71511,78571 bp+–
ND5Protein-coding gene11,79213,6061,815 bp+29.1%
ND6Protein-coding gene13,59014,123534 bp−29.4%
tRNA-GluTransfer RNA14,12414,19168 bp−–
CYTBProtein-coding gene14,19515,3341,140 bp+34.0%
tRNA-ThrTransfer RNA15,33515,40571 bp+–
tRNA-ProTransfer RNA15,40515,47066 bp−–
D-loopControl region15,47117,2831,813 bp–27.1%

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