Hemitripterus bolini
Bigmouth sculpin
GC content
46.02%
Whole genome
Non-coding
1,200 bp
Including the D-loop
Where Bigmouth sculpin sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bigmouth sculpin has the 744th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,794 bp
- GC skew (G − C) / (G + C)
- −0.267
- AT skew (A − T) / (A + T)
- +0.010
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,794 bp
Protein-coding11,407 bp
12S rRNA945 bp
16S rRNA1,691 bp
All tRNA1,551 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.51% | −0.307 | −0.108 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.66% | −0.466 | +0.009 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.26% | −0.198 | −0.127 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.73% | −0.266 | +0.008 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 43.45% | −0.479 | +0.158 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 48.25% | −0.436 | −0.085 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.15% | −0.291 | −0.061 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.57% | −0.329 | −0.216 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.366 | −0.132 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.91% | −0.344 | −0.047 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.71% | −0.395 | +0.010 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.401 | +0.425 | |||||
| CYTBCytochrome b | 1,141 bp | 46.89% | −0.331 | −0.112 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 47.62% | −0.080 | +0.196 | |||||
| 16S rRNA16S ribosomal RNA | 1,691 bp | 45.89% | −0.082 | +0.169 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU110
UUC119
Leu L17.2%
UUA94
UUG22
CUU155
CUC181
CUA161
CUG40
Ile I7.0%
AUU148
AUC118
Met M4.1%
AUA97
AUG58
Val V6.0%
GUU63
GUC64
GUA71
GUG32
Ser S6.6%
UCU38
UCC85
UCA54
UCG12
AGU20
AGC41
Pro P5.7%
CCU58
CCC116
CCA35
CCG9
Thr T7.9%
ACU60
ACC124
ACA105
ACG13
Ala A9.2%
GCU56
GCC187
GCA89
GCG19
Tyr Y2.9%
UAU38
UAC71
His H2.9%
CAU37
CAC73
Gln Q2.6%
CAA80
CAG19
Asn N3.0%
AAU37
AAC78
Lys K1.9%
AAA62
AAG9
Asp D1.9%
GAU26
GAC48
Glu E2.6%
GAA72
GAG28
Cys C0.7%
UGU12
UGC13
Trp W3.2%
UGA94
UGG26
Arg R2.0%
CGU13
CGC18
CGA35
CGG10
Gly G6.5%
GGU36
GGC89
GGA71
GGG51
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_082784.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 47.6% |
| tRNA-Val | Transfer RNA | 1,014 | 1,085 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,776 | 1,691 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,777 | 2,851 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,852 | 3,826 | 975 bp | + | 48.5% |
| tRNA-Ile | Transfer RNA | 3,831 | 3,900 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,900 | 3,970 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,970 | 4,038 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,039 | 5,084 | 1,046 bp | + | 48.7% |
| tRNA-Trp | Transfer RNA | 5,085 | 5,155 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,157 | 5,225 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,227 | 5,299 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,337 | 5,402 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,403 | 5,472 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,474 | 7,024 | 1,551 bp | + | 47.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,025 | 7,095 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,099 | 7,171 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,178 | 7,868 | 691 bp | + | 45.7% |
| tRNA-Lys | Transfer RNA | 7,869 | 7,942 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,944 | 8,111 | 168 bp | + | 43.5% |
| ATP6 | Protein-coding gene | 8,102 | 8,785 | 684 bp | + | 48.3% |
| COX3 | Protein-coding gene | 8,785 | 9,569 | 785 bp | + | 48.2% |
| tRNA-Gly | Transfer RNA | 9,570 | 9,641 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,642 | 9,990 | 349 bp | + | 49.6% |
| tRNA-Arg | Transfer RNA | 9,991 | 10,059 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,060 | 10,356 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,350 | 11,730 | 1,381 bp | + | 45.9% |
| tRNA-His | Transfer RNA | 11,731 | 11,799 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,800 | 11,867 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,872 | 11,944 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,945 | 13,783 | 1,839 bp | + | 46.7% |
| ND6 | Protein-coding gene | 13,780 | 14,301 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,302 | 14,370 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,375 | 15,515 | 1,141 bp | + | 46.9% |
| tRNA-Thr | Transfer RNA | 15,516 | 15,587 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,587 | 15,656 | 70 bp | − | – |