MitoAge

Hepsetus odoe

Pike characid

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Maximum lifespan
5 yr
AnAge record
mtDNA size
16,803 bp
RefSeq NC_015819.1
GC content
46.91%
Whole genome
Non-coding
1,218 bp
D-loop 1,143 bp

Where Pike characid sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pike characid has the 1,981st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Pike characid
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,803 bp
GC skew (G − C) / (G + C)
−0.324
AT skew (A − T) / (A + T)
+0.081

Life history

Maximum lifespan
5 years
Adult weight
2.2 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03823)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,803 bp
Protein-coding11,405 bp
12S rRNA956 bp
16S rRNA1,685 bp
All tRNA1,552 bp
D-loop1,143 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp25.1%24.6%14.6%35.7%50.26%−0.420+0.010
ND2NADH dehydrogenase subunit 21,045 bp28.8%23.5%12.0%35.7%47.66%−0.498+0.101
COX1Cytochrome c oxidase subunit I1,560 bp24.5%27.7%18.5%29.4%47.82%−0.228−0.061
COX2Cytochrome c oxidase subunit II691 bp28.9%23.7%15.9%31.4%47.32%−0.327+0.099
ATP8ATP synthase F0 subunit 8168 bp36.3%25.0%7.1%31.5%38.69%−0.631+0.184
ATP6ATP synthase F0 subunit 6683 bp26.4%26.2%14.5%32.9%47.44%−0.389+0.003
COX3Cytochrome c oxidase subunit III785 bp25.7%26.9%15.7%31.7%47.39%−0.339−0.022
ND3NADH dehydrogenase subunit 3349 bp20.3%27.2%15.5%37.0%52.44%−0.410−0.145
ND4LNADH dehydrogenase subunit 4L297 bp24.6%26.9%14.1%34.3%48.49%−0.417−0.046
ND4NADH dehydrogenase subunit 41,381 bp27.9%24.2%14.2%33.7%47.94%−0.408+0.071
ND5NADH dehydrogenase subunit 51,836 bp28.4%25.1%13.1%33.5%46.57%−0.439+0.062
ND6NADH dehydrogenase subunit 6519 bp39.5%12.5%11.8%36.2%47.98%−0.510+0.519
CYTBCytochrome b1,137 bp24.6%26.9%14.2%34.2%48.46%−0.412−0.044
12S rRNA12S ribosomal RNA956 bp30.3%17.5%21.1%31.1%52.20%−0.190+0.269
16S rRNA16S ribosomal RNA1,685 bp34.0%20.4%19.7%25.9%45.64%−0.137+0.251
D-loopControl region (D-loop)1,143 bp32.8%31.0%14.4%21.8%36.22%−0.203+0.029

Codon usage

Counts per codon, darker is more frequent

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%
UUU96
UUC146
Leu L17.2%
UUA65
UUG28
CUU110
CUC197
CUA210
CUG44
Ile I7.2%
AUU123
AUC152
Met M4.2%
AUA108
AUG52
Val V5.3%
GUU54
GUC65
GUA61
GUG23
Ser S6.2%
UCU35
UCC80
UCA61
UCG7
AGU10
AGC44
Pro P5.8%
CCU34
CCC102
CCA67
CCG16
Thr T8.4%
ACU31
ACC141
ACA136
ACG11
Ala A9.0%
GCU44
GCC181
GCA98
GCG19
Tyr Y2.8%
UAU36
UAC71
His H2.9%
CAU25
CAC85
Gln Q2.5%
CAA87
CAG10
Asn N3.0%
AAU15
AAC101
Lys K2.0%
AAA73
AAG5
Asp D2.0%
GAU18
GAC58
Glu E2.5%
GAA81
GAG16
Cys C0.7%
UGU9
UGC18
Trp W3.2%
UGA106
UGG14
Arg R2.0%
CGU7
CGC18
CGA47
CGG5
Gly G6.4%
GGU29
GGC99
GGA69
GGG46
Stop 0.2%
UAA5
UAG1
AGA0
AGG1

Genome map

38 annotated features in NC_015819.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (46.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,024956 bp+52.2%
tRNA-ValTransfer RNA1,0251,09571 bp+–
16S rRNARibosomal RNA1,0962,7801,685 bp+45.6%
tRNA-Leu (UUR)Transfer RNA2,7812,85575 bp+–
ND1Protein-coding gene2,8563,830975 bp+50.3%
tRNA-IleTransfer RNA3,8393,91072 bp+–
tRNA-GlnTransfer RNA3,9093,97971 bp−–
tRNA-MetTransfer RNA3,9794,04870 bp+–
ND2Protein-coding gene4,0495,0931,045 bp+47.7%
tRNA-TrpTransfer RNA5,0945,16370 bp+–
tRNA-AlaTransfer RNA5,1665,23469 bp−–
tRNA-AsnTransfer RNA5,2365,30873 bp−–
tRNA-CysTransfer RNA5,3405,40667 bp−–
tRNA-TyrTransfer RNA5,4125,48170 bp−–
COX1Protein-coding gene5,4837,0421,560 bp+47.8%
tRNA-Ser (UCN)Transfer RNA7,0307,10071 bp−–
tRNA-AspTransfer RNA7,1057,17571 bp+–
COX2Protein-coding gene7,1907,880691 bp+47.3%
tRNA-LysTransfer RNA7,8817,95474 bp+–
ATP8Protein-coding gene7,9568,123168 bp+38.7%
ATP6Protein-coding gene8,1148,796683 bp+47.4%
COX3Protein-coding gene8,7979,581785 bp+47.4%
tRNA-GlyTransfer RNA9,5829,65473 bp+–
ND3Protein-coding gene9,65510,003349 bp+52.4%
tRNA-ArgTransfer RNA10,00410,07370 bp+–
ND4LProtein-coding gene10,07410,370297 bp+48.5%
ND4Protein-coding gene10,36411,7441,381 bp+47.9%
tRNA-HisTransfer RNA11,74511,81369 bp+–
tRNA-Ser (AGY)Transfer RNA11,81411,88168 bp+–
tRNA-Leu (CUN)Transfer RNA11,88211,95473 bp+–
ND5Protein-coding gene11,95513,7901,836 bp+46.6%
ND6Protein-coding gene13,78714,305519 bp−48.0%
tRNA-GluTransfer RNA14,30614,37469 bp−–
CYTBProtein-coding gene14,37915,5151,137 bp+48.5%
tRNA-ThrTransfer RNA15,52015,59172 bp+–
tRNA-ProTransfer RNA15,59115,66070 bp−–
D-loopControl region15,66116,8031,143 bp–36.2%

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