MitoAge

Urva javanica

Javan mongoose

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Maximum lifespan
16.6 yr
AnAge record
mtDNA size
16,763 bp
RefSeq NC_006835.1
GC content
39.83%
Whole genome
Non-coding
1,384 bp
D-loop 1,318 bp

Where Javan mongoose sits among 2,335 species

Whole-genome GC content against maximum lifespan. Javan mongoose has the 1,130th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Javan mongoose
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,763 bp
GC skew (G − C) / (G + C)
−0.310
AT skew (A − T) / (A + T)
+0.107

Life history

Maximum lifespan
16.6 years
Adult weight
800 g
Birth weight
25.9 g
Basal metabolic rate
2.248 W
Body temperature
39.8 °C
Female sexual maturity
301 days
Male sexual maturity
122 days
Gestation or incubation
49 days
Litter or clutch size
2
Litters per year
2

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02150)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Renamed in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)
Earlier name
Herpestes javanicus

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,763 bp
Protein-coding11,341 bp
12S rRNA957 bp
16S rRNA1,577 bp
All tRNA1,510 bp
D-loop1,318 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp31.9%26.8%11.8%29.6%41.38%−0.429+0.087
ND2NADH dehydrogenase subunit 21,044 bp36.8%24.6%8.9%29.7%38.60%−0.538+0.198
COX1Cytochrome c oxidase subunit I1,545 bp27.3%30.7%17.6%24.4%42.01%−0.162−0.058
COX2Cytochrome c oxidase subunit II684 bp35.1%28.1%13.5%23.4%36.84%−0.270+0.111
ATP8ATP synthase F0 subunit 8204 bp40.2%26.0%7.8%26.0%33.82%−0.536+0.215
ATP6ATP synthase F0 subunit 6681 bp31.7%29.1%11.3%27.9%39.21%−0.423+0.043
COX3Cytochrome c oxidase subunit III784 bp27.6%29.8%15.7%26.9%42.60%−0.263−0.040
ND3NADH dehydrogenase subunit 3346 bp30.6%29.5%13.6%26.3%39.88%−0.319+0.019
ND4LNADH dehydrogenase subunit 4L297 bp29.0%33.0%12.1%25.9%38.05%−0.363−0.065
ND4NADH dehydrogenase subunit 41,378 bp33.6%27.7%11.2%27.4%38.68%−0.418+0.096
ND5NADH dehydrogenase subunit 51,821 bp33.0%27.5%11.5%27.8%39.38%−0.413+0.091
ND6NADH dehydrogenase subunit 6528 bp43.4%18.8%9.5%28.4%37.88%−0.500+0.396
CYTBCytochrome b1,140 bp31.4%26.6%12.5%29.6%42.02%−0.407+0.083
12S rRNA12S ribosomal RNA957 bp36.2%21.1%17.6%25.2%42.74%−0.178+0.263
16S rRNA16S ribosomal RNA1,577 bp37.4%23.1%17.6%21.8%39.43%−0.105+0.237
D-loopControl region (D-loop)1,318 bp31.3%27.5%14.6%26.6%41.20%−0.293+0.063

Codon usage

Counts per codon, darker is more frequent

3,799 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%
UUU90
UUC141
Leu L15.4%
UUA102
UUG14
CUU68
CUC81
CUA287
CUG34
Ile I8.8%
AUU176
AUC160
Met M6.7%
AUA197
AUG56
Val V4.8%
GUU35
GUC26
GUA95
GUG25
Ser S7.8%
UCU50
UCC68
UCA113
UCG9
AGU15
AGC42
Pro P5.1%
CCU41
CCC59
CCA88
CCG6
Thr T8.0%
ACU56
ACC91
ACA148
ACG10
Ala A6.7%
GCU59
GCC102
GCA83
GCG10
Tyr Y3.5%
UAU68
UAC66
His H2.5%
CAU27
CAC67
Gln Q2.3%
CAA81
CAG8
Asn N4.1%
AAU62
AAC95
Lys K2.7%
AAA91
AAG12
Asp D1.8%
GAU25
GAC45
Glu E2.6%
GAA78
GAG19
Cys C0.6%
UGU9
UGC14
Trp W2.7%
UGA93
UGG11
Arg R1.7%
CGU6
CGC12
CGA41
CGG6
Gly G5.7%
GGU40
GGC48
GGA107
GGG21
Stop 0.3%
UAA8
UAG1
AGA1
AGG0

Genome map

38 annotated features in NC_006835.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (39.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,027957 bp+42.7%
tRNA-ValTransfer RNA1,0281,09568 bp+–
16S rRNARibosomal RNA1,0962,6721,577 bp+39.4%
tRNA-Leu (UUR)Transfer RNA2,6732,74775 bp+–
ND1Protein-coding gene2,7503,706957 bp+41.4%
tRNA-IleTransfer RNA3,7063,77469 bp+–
tRNA-GlnTransfer RNA3,7723,84473 bp−–
tRNA-MetTransfer RNA3,8463,91469 bp+–
ND2Protein-coding gene3,9154,9581,044 bp+38.6%
tRNA-TrpTransfer RNA4,9575,02468 bp+–
tRNA-AlaTransfer RNA5,0365,10469 bp−–
tRNA-AsnTransfer RNA5,1065,17873 bp−–
tRNA-CysTransfer RNA5,2135,27866 bp−–
tRNA-TyrTransfer RNA5,2805,34667 bp−–
COX1Protein-coding gene5,3486,8921,545 bp+42.0%
tRNA-Ser (UCN)Transfer RNA6,8906,95869 bp−–
tRNA-AspTransfer RNA6,9657,03268 bp+–
COX2Protein-coding gene7,0337,716684 bp+36.8%
tRNA-LysTransfer RNA7,7207,78667 bp+–
ATP8Protein-coding gene7,7887,991204 bp+33.8%
ATP6Protein-coding gene7,9498,629681 bp+39.2%
COX3Protein-coding gene8,6299,412784 bp+42.6%
tRNA-GlyTransfer RNA9,4139,48169 bp+–
ND3Protein-coding gene9,4829,827346 bp+39.9%
tRNA-ArgTransfer RNA9,8299,89769 bp+–
ND4LProtein-coding gene9,89810,194297 bp+38.1%
ND4Protein-coding gene10,18811,5651,378 bp+38.7%
tRNA-HisTransfer RNA11,56611,63570 bp+–
tRNA-Ser (AGY)Transfer RNA11,63611,69459 bp+–
tRNA-Leu (CUN)Transfer RNA11,69511,76470 bp+–
ND5Protein-coding gene11,76513,5851,821 bp+39.4%
ND6Protein-coding gene13,56914,096528 bp−37.9%
tRNA-GluTransfer RNA14,09714,16569 bp−–
CYTBProtein-coding gene14,16915,3081,140 bp+42.0%
tRNA-ThrTransfer RNA15,30915,37870 bp+–
tRNA-ProTransfer RNA15,37915,44466 bp−–
D-loopControl region15,44616,7631,318 bp–41.2%

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