Heteronotia binoei
Prickly gecko
GC content
43.77%
Whole genome
Non-coding
5,889 bp
D-loop 3,460 bp
Where Prickly gecko sits among 2,335 species
Whole-genome GC content against maximum lifespan. Prickly gecko has the 1,327th longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome25,972 bp
- GC skew (G − C) / (G + C)
- −0.409
- AT skew (A − T) / (A + T)
- +0.184
Life history
- Maximum lifespan
- 13.6 years
- Adult weight
- 2.2 g
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03477)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome25,972 bp
Protein-coding12,967 bp
12S rRNA950 bp
16S rRNA1,552 bp
All tRNA2,121 bp
D-loop3,460 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 969 bp | 43.24% | −0.489 | +0.124 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,041 bp | 44.86% | −0.615 | +0.258 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.58% | −0.242 | −0.017 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 45.49% | −0.342 | +0.168 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 41.82% | −0.536 | +0.229 | |||||
| ATP6ATP synthase F0 subunit 6 | 680 bp | 45.44% | −0.547 | +0.116 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 45.66% | −0.346 | +0.056 | |||||
| ND3NADH dehydrogenase subunit 3 | 347 bp | 44.67% | −0.445 | −0.010 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.46% | −0.467 | +0.074 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,359 bp | 43.71% | −0.539 | +0.148 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,784 bp | 43.72% | −0.541 | +0.169 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.04% | −0.672 | +0.609 | |||||
| CYTBCytochrome b | 1,139 bp | 45.22% | −0.452 | +0.061 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 48.11% | −0.269 | +0.286 | |||||
| 16S rRNA16S ribosomal RNA | 1,552 bp | 44.91% | −0.254 | +0.301 | |||||
| D-loopControl region (D-loop) | 3,460 bp | 34.94% | −0.396 | +0.202 |
Codon usage
Counts per codon, darker is more frequent3,772 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.2%
UUU78
UUC118
Leu L18.0%
UUA81
UUG25
CUU92
CUC120
CUA315
CUG47
Ile I6.9%
AUU103
AUC156
Met M5.6%
AUA182
AUG31
Val V4.1%
GUU43
GUC29
GUA68
GUG14
Ser S6.0%
UCU27
UCC70
UCA79
UCG1
AGU13
AGC38
Pro P5.7%
CCU28
CCC62
CCA116
CCG8
Thr T11.5%
ACU55
ACC189
ACA185
ACG5
Ala A7.7%
GCU31
GCC146
GCA96
GCG16
Tyr Y3.0%
UAU43
UAC69
His H3.0%
CAU26
CAC87
Gln Q2.6%
CAA88
CAG9
Asn N3.4%
AAU30
AAC99
Lys K2.0%
AAA74
AAG2
Asp D1.7%
GAU14
GAC52
Glu E2.2%
GAA68
GAG14
Cys C0.9%
UGU11
UGC22
Trp W2.7%
UGA84
UGG19
Arg R1.9%
CGU7
CGC28
CGA32
CGG5
Gly G5.7%
GGU21
GGC87
GGA67
GGG40
Stop 0.2%
UAA2
UAG4
AGA1
AGG0
Genome map
52 annotated features in NC_010292.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding15
- rRNA4
- tRNA31
- D-loop2
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 52 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| COX1 | Protein-coding gene | 1 | 1,551 | 1,551 bp | + | 45.6% |
| tRNA-Ser (UCN) | Transfer RNA | 1,545 | 1,618 | 74 bp | − | – |
| tRNA-Asp | Transfer RNA | 1,620 | 1,688 | 69 bp | + | – |
| COX2 | Protein-coding gene | 1,689 | 2,376 | 688 bp | + | 45.5% |
| tRNA-Lys | Transfer RNA | 2,377 | 2,440 | 64 bp | + | – |
| ATP8 | Protein-coding gene | 2,441 | 2,605 | 165 bp | + | 41.8% |
| ATP6 | Protein-coding gene | 2,596 | 3,275 | 680 bp | + | 45.4% |
| COX3 | Protein-coding gene | 3,276 | 4,059 | 784 bp | + | 45.7% |
| tRNA-Gly | Transfer RNA | 4,060 | 4,129 | 70 bp | + | – |
| ND3 | Protein-coding gene | 4,131 | 4,477 | 347 bp | + | 44.7% |
| tRNA-Arg | Transfer RNA | 4,479 | 4,543 | 65 bp | + | – |
| ND4L | Protein-coding gene | 4,546 | 4,842 | 297 bp | + | 45.5% |
| ND4 | Protein-coding gene | 4,836 | 6,194 | 1,359 bp | + | 43.7% |
| tRNA-His | Transfer RNA | 6,198 | 6,266 | 69 bp | + | – |
| tRNA-Ser | Transfer RNA | 6,267 | 6,324 | 58 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 6,325 | 6,396 | 72 bp | + | – |
| ND5 | Protein-coding gene | 6,398 | 8,181 | 1,784 bp | + | 43.7% |
| ND6 | Protein-coding gene | 8,179 | 8,700 | 522 bp | − | 49.0% |
| tRNA-Glu | Transfer RNA | 8,701 | 8,769 | 69 bp | − | – |
| CYTB | Protein-coding gene | 8,773 | 9,911 | 1,139 bp | + | 45.2% |
| tRNA-Thr | Transfer RNA | 9,912 | 9,979 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 9,980 | 10,046 | 67 bp | − | – |
| D-loop | Control region | 10,047 | 11,843 | 1,797 bp | – | 34.9% |
| tRNA-Phe | Transfer RNA | 11,844 | 11,916 | 73 bp | + | – |
| 12S rRNA | Ribosomal RNA | 11,917 | 12,866 | 950 bp | + | 48.1% |
| tRNA-Val | Transfer RNA | 12,867 | 12,932 | 66 bp | + | – |
| 16S rRNA | Ribosomal RNA | 12,933 | 14,484 | 1,552 bp | + | 44.9% |
| tRNA-Leu (UUR) | Transfer RNA | 14,485 | 14,560 | 76 bp | + | – |
| tRNA-His | Transfer RNA | 15,160 | 15,228 | 69 bp | + | – |
| tRNA-Ser | Transfer RNA | 15,229 | 15,286 | 58 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 15,287 | 15,358 | 72 bp | + | – |
| ND6 | Protein-coding gene | 17,140 | 17,661 | 522 bp | − | 49.0% |
| tRNA-Glu | Transfer RNA | 17,662 | 17,730 | 69 bp | − | – |
| CYTB | Protein-coding gene | 17,734 | 18,872 | 1,139 bp | + | 45.2% |
| tRNA-Thr | Transfer RNA | 18,873 | 18,940 | 68 bp | + | – |
| tRNA-Pro | Transfer RNA | 18,941 | 19,005 | 65 bp | − | – |
| D-loop | Control region | 19,006 | 20,668 | 1,663 bp | – | 34.9% |
| tRNA-Phe | Transfer RNA | 20,669 | 20,741 | 73 bp | + | – |
| 12S rRNA | Ribosomal RNA | 20,742 | 21,691 | 950 bp | + | 48.1% |
| tRNA-Val | Transfer RNA | 21,692 | 21,757 | 66 bp | + | – |
| 16S rRNA | Ribosomal RNA | 21,758 | 23,309 | 1,552 bp | + | 44.9% |
| tRNA-Leu (UUR) | Transfer RNA | 23,310 | 23,385 | 76 bp | + | – |
| ND1 | Protein-coding gene | 23,386 | 24,354 | 969 bp | + | 43.2% |
| tRNA-Ile | Transfer RNA | 24,358 | 24,430 | 73 bp | + | – |
| tRNA-Gln | Transfer RNA | 24,429 | 24,501 | 73 bp | − | – |
| tRNA-Met | Transfer RNA | 24,501 | 24,570 | 70 bp | + | – |
| ND2 | Protein-coding gene | 24,571 | 25,611 | 1,041 bp | + | 44.9% |
| tRNA-Trp | Transfer RNA | 25,610 | 25,680 | 71 bp | − | – |
| tRNA-Ala | Transfer RNA | 25,680 | 25,748 | 69 bp | + | – |
| tRNA-Asn | Transfer RNA | 25,751 | 25,821 | 71 bp | − | – |
| tRNA-Cys | Transfer RNA | 25,850 | 25,907 | 58 bp | − | – |
| tRNA-Tyr | Transfer RNA | 25,908 | 25,971 | 64 bp | − | – |