Heteropneustes fossilis

Stinging catfish

Maximum lifespan

17.5 yr

AnAge record

mtDNA size

16,489 bp

RefSeq NC_015827.1

GC content

41.79%

Whole genome

Non-coding

929 bp

D-loop 859 bp

Where Stinging catfish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Stinging catfish has the 1,073rd longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,489 bp

GC skew (G − C) / (G + C): −0.288
AT skew (A − T) / (A + T): +0.105

Life history

Maximum lifespan: 17.5 years
Female sexual maturity: 365 days
Male sexual maturity: 365 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04563)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,489 bp

Protein-coding11,387 bp

12S rRNA955 bp

16S rRNA1,664 bp

All tRNA1,554 bp

D-loop859 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Heteropneustes fossilis genes

ND1NADH dehydrogenase subunit 1	975 bp	30.5%	26.7%	13.8%	29.0%	42.87%	−0.354	+0.066
ND2NADH dehydrogenase subunit 2	1,045 bp	35.4%	23.3%	11.0%	30.3%	41.34%	−0.468	+0.207
COX1Cytochrome c oxidase subunit I	1,551 bp	28.8%	29.6%	17.0%	24.6%	41.59%	−0.185	−0.013
COX2Cytochrome c oxidase subunit II	691 bp	31.0%	27.2%	14.9%	26.9%	41.82%	−0.287	+0.065
ATP8ATP synthase F0 subunit 8	168 bp	36.9%	25.0%	10.7%	27.4%	38.10%	−0.438	+0.192
ATP6ATP synthase F0 subunit 6	683 bp	33.7%	26.6%	10.5%	29.1%	39.68%	−0.469	+0.117
COX3Cytochrome c oxidase subunit III	784 bp	28.4%	29.7%	16.2%	25.6%	41.84%	−0.226	−0.022
ND3NADH dehydrogenase subunit 3	349 bp	28.1%	29.5%	12.6%	29.8%	42.41%	−0.405	−0.025
ND4LNADH dehydrogenase subunit 4L	297 bp	24.6%	28.6%	14.8%	32.0%	46.80%	−0.367	−0.076
ND4NADH dehydrogenase subunit 4	1,381 bp	31.7%	27.3%	12.7%	28.2%	40.99%	−0.378	+0.075
ND5NADH dehydrogenase subunit 5	1,827 bp	33.1%	26.9%	11.9%	28.1%	40.01%	−0.406	+0.102
ND6NADH dehydrogenase subunit 6	519 bp	41.2%	15.0%	8.9%	34.9%	43.74%	−0.595	+0.466
CYTBCytochrome b	1,138 bp	29.7%	28.9%	13.5%	27.9%	41.39%	−0.346	+0.013
12S rRNA12S ribosomal RNA	955 bp	32.9%	20.6%	20.2%	26.3%	46.49%	−0.131	+0.229
16S rRNA16S ribosomal RNA	1,664 bp	35.9%	21.0%	19.6%	23.6%	43.15%	−0.092	+0.262
D-loopControl region (D-loop)	859 bp	31.5%	31.4%	14.6%	22.5%	37.02%	−0.214	+0.002

Codon usage

Counts per codon, darker is more frequent

Gene

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%

UUU102

UUC121

Leu L16.7%

UUA133

UUG12

CUU73

CUC82

CUA310

CUG24

Ile I8.0%

AUU187

AUC118

Met M4.8%

AUA144

AUG37

Val V5.5%

GUU50

GUC34

GUA106

GUG20

Ser S6.0%

UCU36

UCC51

UCA94

UCG2

AGU7

AGC37

Pro P5.6%

CCU27

CCC56

CCA121

CCG8

Thr T8.1%

ACU39

ACC107

ACA157

ACG6

Ala A8.5%

GCU61

GCC126

GCA129

GCG8

Tyr Y3.0%

UAU59

UAC54

His H2.7%

CAU34

CAC69

Gln Q2.6%

CAA95

CAG4

Asn N3.4%

AAU41

AAC88

Lys K2.1%

AAA73

AAG6

Asp D2.1%

GAU32

GAC48

Glu E2.6%

GAA88

GAG10

Cys C0.8%

UGU16

UGC13

Trp W3.2%

UGA110

UGG12

Arg R1.9%

CGU6

CGC15

CGA47

CGG5

Gly G6.4%

GGU56

GGC57

GGA104

GGG27

Stop 0.2%

UAA6

UAG0

AGA0

AGG0

Genome map

38 annotated features in NC_015827.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (41.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Heteropneustes fossilis (NC_015827.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,024	955 bp	+	46.5%
tRNA-Val	Transfer RNA	1,025	1,096	72 bp	+	–
16S rRNA	Ribosomal RNA	1,097	2,760	1,664 bp	+	43.2%
tRNA-Leu (UUR)	Transfer RNA	2,761	2,835	75 bp	+	–
ND1	Protein-coding gene	2,836	3,810	975 bp	+	42.9%
tRNA-Ile	Transfer RNA	3,816	3,887	72 bp	+	–
tRNA-Gln	Transfer RNA	3,887	3,957	71 bp	−	–
tRNA-Met	Transfer RNA	3,957	4,026	70 bp	+	–
ND2	Protein-coding gene	4,027	5,071	1,045 bp	+	41.3%
tRNA-Trp	Transfer RNA	5,072	5,142	71 bp	+	–
tRNA-Ala	Transfer RNA	5,145	5,213	69 bp	−	–
tRNA-Asn	Transfer RNA	5,215	5,287	73 bp	−	–
tRNA-Cys	Transfer RNA	5,317	5,382	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,391	5,460	70 bp	−	–
COX1	Protein-coding gene	5,462	7,012	1,551 bp	+	41.6%
tRNA-Ser (UCN)	Transfer RNA	7,013	7,083	71 bp	−	–
tRNA-Asp	Transfer RNA	7,088	7,158	71 bp	+	–
COX2	Protein-coding gene	7,173	7,863	691 bp	+	41.8%
tRNA-Lys	Transfer RNA	7,864	7,937	74 bp	+	–
ATP8	Protein-coding gene	7,939	8,106	168 bp	+	38.1%
ATP6	Protein-coding gene	8,097	8,779	683 bp	+	39.7%
COX3	Protein-coding gene	8,780	9,563	784 bp	+	41.8%
tRNA-Gly	Transfer RNA	9,564	9,636	73 bp	+	–
ND3	Protein-coding gene	9,637	9,985	349 bp	+	42.4%
tRNA-Arg	Transfer RNA	9,986	10,054	69 bp	+	–
ND4L	Protein-coding gene	10,055	10,351	297 bp	+	46.8%
ND4	Protein-coding gene	10,345	11,725	1,381 bp	+	41.0%
tRNA-His	Transfer RNA	11,726	11,795	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,796	11,862	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,865	11,937	73 bp	+	–
ND5	Protein-coding gene	11,938	13,764	1,827 bp	+	40.0%
ND6	Protein-coding gene	13,761	14,279	519 bp	−	43.7%
tRNA-Glu	Transfer RNA	14,280	14,348	69 bp	−	–
CYTB	Protein-coding gene	14,352	15,489	1,138 bp	+	41.4%
tRNA-Thr	Transfer RNA	15,490	15,562	73 bp	+	–
tRNA-Pro	Transfer RNA	15,561	15,630	70 bp	−	–
D-loop	Control region	15,631	16,489	859 bp	–	37.0%