Hexagrammos otakii
Fat greenling
GC content
47.20%
Whole genome
Non-coding
914 bp
D-loop 848 bp
Where Fat greenling sits among 2,335 species
Whole-genome GC content against maximum lifespan. Fat greenling has the 2,009th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,513 bp
- GC skew (G − C) / (G + C)
- −0.266
- AT skew (A − T) / (A + T)
- +0.019
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,513 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA1,693 bp
All tRNA1,552 bp
D-loop848 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.77% | −0.374 | −0.083 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 50.38% | −0.423 | −0.021 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.26% | −0.195 | −0.120 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.85% | −0.267 | +0.015 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.447 | +0.130 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.37% | −0.432 | −0.050 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.15% | −0.270 | −0.057 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.42% | −0.361 | −0.200 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 54.21% | −0.354 | −0.176 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.60% | −0.364 | −0.029 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.33% | −0.359 | −0.019 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.79% | −0.356 | +0.385 | |||||
| CYTBCytochrome b | 1,141 bp | 48.73% | −0.342 | −0.087 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 48.36% | −0.096 | +0.215 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 46.13% | −0.083 | +0.193 | |||||
| D-loopControl region (D-loop) | 848 bp | 37.38% | −0.098 | +0.032 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU88
UUC144
Leu L17.2%
UUA87
UUG25
CUU163
CUC165
CUA162
CUG52
Ile I6.8%
AUU131
AUC128
Met M4.1%
AUA77
AUG78
Val V6.1%
GUU56
GUC70
GUA82
GUG23
Ser S6.7%
UCU47
UCC77
UCA52
UCG15
AGU14
AGC50
Pro P5.8%
CCU55
CCC118
CCA33
CCG13
Thr T8.0%
ACU47
ACC139
ACA106
ACG11
Ala A9.4%
GCU65
GCC188
GCA88
GCG15
Tyr Y2.9%
UAU30
UAC79
His H2.8%
CAU27
CAC80
Gln Q2.6%
CAA84
CAG15
Asn N2.9%
AAU40
AAC70
Lys K1.9%
AAA59
AAG12
Asp D1.9%
GAU18
GAC56
Glu E2.6%
GAA76
GAG23
Cys C0.6%
UGU5
UGC19
Trp W3.1%
UGA98
UGG20
Arg R2.0%
CGU16
CGC12
CGA35
CGG14
Gly G6.5%
GGU49
GGC84
GGA66
GGG49
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_028630.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 48.4% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,780 | 1,693 bp | + | 46.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,854 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 50.8% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,903 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,903 | 3,973 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,973 | 4,041 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,042 | 5,087 | 1,046 bp | + | 50.4% |
| tRNA-Trp | Transfer RNA | 5,088 | 5,158 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,160 | 5,228 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,230 | 5,302 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,406 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,479 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 47.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,179 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,186 | 7,876 | 691 bp | + | 43.9% |
| tRNA-Lys | Transfer RNA | 7,877 | 7,950 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,952 | 8,119 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,110 | 8,793 | 684 bp | + | 47.4% |
| COX3 | Protein-coding gene | 8,793 | 9,577 | 785 bp | + | 48.2% |
| tRNA-Gly | Transfer RNA | 9,578 | 9,650 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 9,999 | 349 bp | + | 48.4% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,068 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,069 | 10,365 | 297 bp | + | 54.2% |
| ND4 | Protein-coding gene | 10,359 | 11,739 | 1,381 bp | + | 49.6% |
| tRNA-His | Transfer RNA | 11,740 | 11,808 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,809 | 11,876 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,881 | 11,953 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,954 | 13,792 | 1,839 bp | + | 46.3% |
| ND6 | Protein-coding gene | 13,789 | 14,310 | 522 bp | − | 45.8% |
| tRNA-Glu | Transfer RNA | 14,311 | 14,379 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,384 | 15,524 | 1,141 bp | + | 48.7% |
| tRNA-Thr | Transfer RNA | 15,525 | 15,596 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,596 | 15,665 | 70 bp | − | – |
| D-loop | Control region | 15,666 | 16,513 | 848 bp | – | 37.4% |