Hiodon alosoides

Goldeye

Maximum lifespan

14 yr

AnAge record

mtDNA size

16,619 bp

RefSeq NC_005145.1

GC content

43.10%

Whole genome

Non-coding

996 bp

D-loop 911 bp

Where Goldeye sits among 2,335 species

Whole-genome GC content against maximum lifespan. Goldeye has the 1,282nd longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,619 bp

GC skew (G − C) / (G + C): −0.238
AT skew (A − T) / (A + T): +0.095

Life history

Maximum lifespan: 14 years
Adult weight: 946 g

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04089)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,619 bp

Protein-coding11,418 bp

12S rRNA958 bp

16S rRNA1,699 bp

All tRNA1,557 bp

D-loop911 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Hiodon alosoides genes

ND1NADH dehydrogenase subunit 1	975 bp	27.8%	27.2%	15.7%	29.3%	45.03%	−0.303	+0.011
ND2NADH dehydrogenase subunit 2	1,045 bp	32.2%	24.1%	13.2%	30.5%	43.73%	−0.396	+0.143
COX1Cytochrome c oxidase subunit I	1,560 bp	26.6%	28.8%	18.1%	26.5%	44.62%	−0.187	−0.039
COX2Cytochrome c oxidase subunit II	691 bp	29.2%	27.5%	16.9%	26.3%	43.27%	−0.217	+0.031
ATP8ATP synthase F0 subunit 8	168 bp	34.5%	24.4%	9.5%	31.5%	41.07%	−0.536	+0.172
ATP6ATP synthase F0 subunit 6	683 bp	29.1%	29.7%	12.3%	28.8%	41.14%	−0.402	−0.010
COX3Cytochrome c oxidase subunit III	785 bp	27.9%	25.6%	16.8%	29.7%	46.50%	−0.277	+0.043
ND3NADH dehydrogenase subunit 3	349 bp	26.1%	30.9%	16.6%	26.4%	42.98%	−0.227	−0.085
ND4LNADH dehydrogenase subunit 4L	297 bp	27.3%	28.3%	15.2%	29.3%	44.44%	−0.318	−0.018
ND4NADH dehydrogenase subunit 4	1,381 bp	30.6%	26.9%	14.5%	28.0%	42.51%	−0.319	+0.065
ND5NADH dehydrogenase subunit 5	1,842 bp	33.2%	26.8%	12.5%	27.5%	40.01%	−0.376	+0.106
ND6NADH dehydrogenase subunit 6	522 bp	42.1%	15.3%	12.5%	30.1%	42.53%	−0.414	+0.467
CYTBCytochrome b	1,141 bp	28.2%	29.2%	15.5%	27.1%	42.59%	−0.272	−0.017
12S rRNA12S ribosomal RNA	958 bp	30.9%	19.3%	23.4%	26.4%	49.79%	−0.061	+0.231
16S rRNA16S ribosomal RNA	1,699 bp	36.1%	20.2%	21.2%	22.4%	43.61%	−0.028	+0.282
D-loopControl region (D-loop)	911 bp	36.6%	30.5%	13.3%	19.6%	32.93%	−0.193	+0.090

Codon usage

Counts per codon, darker is more frequent

Gene

3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU109

UUC124

Leu L16.2%

UUA105

UUG17

CUU104

CUC77

CUA265

CUG49

Ile I7.5%

AUU162

AUC123

Met M4.5%

AUA117

AUG56

Val V6.2%

GUU61

GUC41

GUA115

GUG21

Ser S6.2%

UCU33

UCC46

UCA105

UCG8

AGU7

AGC39

Pro P5.5%

CCU41

CCC78

CCA84

CCG7

Thr T7.6%

ACU56

ACC87

ACA137

ACG10

Ala A9.0%

GCU59

GCC156

GCA118

GCG10

Tyr Y3.1%

UAU59

UAC58

His H2.7%

CAU28

CAC74

Gln Q2.7%

CAA93

CAG10

Asn N3.3%

AAU52

AAC73

Lys K2.2%

AAA76

AAG8

Asp D2.1%

GAU22

GAC57

Glu E2.6%

GAA87

GAG12

Cys C0.7%

UGU7

UGC20

Trp W3.2%

UGA109

UGG13

Arg R2.0%

CGU6

CGC8

CGA54

CGG9

Gly G6.4%

GGU34

GGC47

GGA119

GGG42

Stop 0.2%

UAA4

UAG1

AGA0

AGG1

Genome map

38 annotated features in NC_005145.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (43.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Hiodon alosoides (NC_005145.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,026	958 bp	+	49.8%
tRNA-Val	Transfer RNA	1,027	1,098	72 bp	+	–
16S rRNA	Ribosomal RNA	1,099	2,797	1,699 bp	+	43.6%
tRNA-Leu (UUR)	Transfer RNA	2,798	2,872	75 bp	+	–
ND1	Protein-coding gene	2,873	3,847	975 bp	+	45.0%
tRNA-Ile	Transfer RNA	3,858	3,929	72 bp	+	–
tRNA-Gln	Transfer RNA	3,929	3,999	71 bp	−	–
tRNA-Met	Transfer RNA	3,999	4,067	69 bp	+	–
ND2	Protein-coding gene	4,068	5,112	1,045 bp	+	43.7%
tRNA-Trp	Transfer RNA	5,113	5,184	72 bp	+	–
tRNA-Ala	Transfer RNA	5,186	5,254	69 bp	−	–
tRNA-Asn	Transfer RNA	5,256	5,328	73 bp	−	–
tRNA-Cys	Transfer RNA	5,367	5,433	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,434	5,504	71 bp	−	–
COX1	Protein-coding gene	5,506	7,065	1,560 bp	+	44.6%
tRNA-Ser (UCN)	Transfer RNA	7,057	7,127	71 bp	−	–
tRNA-Asp	Transfer RNA	7,136	7,207	72 bp	+	–
COX2	Protein-coding gene	7,221	7,911	691 bp	+	43.3%
tRNA-Lys	Transfer RNA	7,912	7,985	74 bp	+	–
ATP8	Protein-coding gene	7,987	8,154	168 bp	+	41.1%
ATP6	Protein-coding gene	8,145	8,827	683 bp	+	41.1%
COX3	Protein-coding gene	8,828	9,612	785 bp	+	46.5%
tRNA-Gly	Transfer RNA	9,613	9,684	72 bp	+	–
ND3	Protein-coding gene	9,685	10,033	349 bp	+	43.0%
tRNA-Arg	Transfer RNA	10,034	10,103	70 bp	+	–
ND4L	Protein-coding gene	10,104	10,400	297 bp	+	44.4%
ND4	Protein-coding gene	10,394	11,774	1,381 bp	+	42.5%
tRNA-His	Transfer RNA	11,775	11,843	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,844	11,911	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,913	11,985	73 bp	+	–
ND5	Protein-coding gene	11,986	13,827	1,842 bp	+	40.0%
ND6	Protein-coding gene	13,824	14,345	522 bp	−	42.5%
tRNA-Glu	Transfer RNA	14,346	14,414	69 bp	−	–
CYTB	Protein-coding gene	14,420	15,560	1,141 bp	+	42.6%
tRNA-Thr	Transfer RNA	15,561	15,632	72 bp	+	–
tRNA-Pro	Transfer RNA	15,639	15,708	70 bp	−	–
D-loop	Control region	15,709	16,619	911 bp	–	32.9%