Hippocampus kuda
Spotted seahorse
GC content
38.37%
Whole genome
Non-coding
945 bp
D-loop 879 bp
Where Spotted seahorse sits among 2,335 species
Whole-genome GC content against maximum lifespan. Spotted seahorse has the 2,272nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,527 bp
- GC skew (G − C) / (G + C)
- −0.226
- AT skew (A − T) / (A + T)
- +0.052
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,527 bp
Protein-coding11,399 bp
12S rRNA938 bp
16S rRNA1,695 bp
All tRNA1,550 bp
D-loop879 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 37.64% | −0.286 | +0.007 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,039 bp | 38.40% | −0.434 | +0.094 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 40.35% | −0.136 | −0.096 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 38.06% | −0.217 | +0.061 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 30.36% | −0.373 | +0.060 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 36.75% | −0.410 | −0.028 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 39.92% | −0.201 | −0.079 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 37.54% | −0.328 | −0.083 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 40.07% | −0.361 | −0.045 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 38.38% | −0.309 | +0.008 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 35.84% | −0.325 | +0.044 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 39.46% | −0.359 | +0.380 | |||||
| CYTBCytochrome b | 1,141 bp | 39.70% | −0.241 | −0.044 | |||||
| 12S rRNA12S ribosomal RNA | 938 bp | 40.73% | −0.063 | +0.162 | |||||
| 16S rRNA16S ribosomal RNA | 1,695 bp | 38.11% | −0.053 | +0.216 | |||||
| D-loopControl region (D-loop) | 879 bp | 33.11% | −0.216 | +0.058 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU129
UUC94
Leu L16.6%
UUA224
UUG31
CUU119
CUC39
CUA189
CUG28
Ile I8.0%
AUU182
AUC124
Met M5.3%
AUA169
AUG33
Val V5.4%
GUU65
GUC30
GUA95
GUG14
Ser S7.1%
UCU58
UCC38
UCA117
UCG7
AGU18
AGC33
Pro P5.7%
CCU81
CCC61
CCA65
CCG10
Thr T7.8%
ACU60
ACC73
ACA161
ACG4
Ala A7.6%
GCU74
GCC86
GCA125
GCG5
Tyr Y3.0%
UAU62
UAC53
His H2.7%
CAU45
CAC56
Gln Q2.5%
CAA91
CAG4
Asn N3.7%
AAU69
AAC72
Lys K2.2%
AAA78
AAG4
Asp D1.8%
GAU34
GAC36
Glu E2.6%
GAA79
GAG20
Cys C0.6%
UGU10
UGC14
Trp W3.2%
UGA104
UGG18
Arg R1.9%
CGU5
CGC5
CGA56
CGG6
Gly G6.2%
GGU57
GGC37
GGA98
GGG44
Stop 0.2%
UAA6
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_010272.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (38.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 71 | 71 bp | + | – |
| 12S rRNA | Ribosomal RNA | 72 | 1,009 | 938 bp | + | 40.7% |
| tRNA-Val | Transfer RNA | 1,010 | 1,082 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,083 | 2,777 | 1,695 bp | + | 38.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,851 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,852 | 3,826 | 975 bp | + | 37.6% |
| tRNA-Ile | Transfer RNA | 3,828 | 3,899 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,899 | 3,969 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,971 | 4,040 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,041 | 5,079 | 1,039 bp | + | 38.4% |
| tRNA-Trp | Transfer RNA | 5,080 | 5,150 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,152 | 5,220 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,222 | 5,294 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,330 | 5,396 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,397 | 5,463 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,465 | 7,018 | 1,554 bp | + | 40.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,020 | 7,090 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,105 | 7,172 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,177 | 7,867 | 691 bp | + | 38.1% |
| tRNA-Lys | Transfer RNA | 7,868 | 7,942 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,944 | 8,111 | 168 bp | + | 30.4% |
| ATP6 | Protein-coding gene | 8,102 | 8,784 | 683 bp | + | 36.8% |
| COX3 | Protein-coding gene | 8,785 | 9,568 | 784 bp | + | 39.9% |
| tRNA-Gly | Transfer RNA | 9,569 | 9,638 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,639 | 9,987 | 349 bp | + | 37.5% |
| tRNA-Arg | Transfer RNA | 9,988 | 10,056 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,057 | 10,353 | 297 bp | + | 40.1% |
| ND4 | Protein-coding gene | 10,347 | 11,727 | 1,381 bp | + | 38.4% |
| tRNA-His | Transfer RNA | 11,728 | 11,796 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,797 | 11,864 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,867 | 11,939 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,940 | 13,775 | 1,836 bp | + | 35.8% |
| ND6 | Protein-coding gene | 13,772 | 14,293 | 522 bp | − | 39.5% |
| tRNA-Glu | Transfer RNA | 14,294 | 14,362 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,367 | 15,507 | 1,141 bp | + | 39.7% |
| tRNA-Thr | Transfer RNA | 15,508 | 15,579 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,579 | 15,648 | 70 bp | − | – |
| D-loop | Control region | 15,649 | 16,527 | 879 bp | – | 33.1% |