MitoAge

Hucho hucho

Danube salmon

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Maximum lifespan
15 yr
AnAge record
mtDNA size
16,751 bp
RefSeq NC_025589.1
GC content
45.50%
Whole genome
Non-coding
1,164 bp
D-loop 1,096 bp

Where Danube salmon sits among 2,335 species

Whole-genome GC content against maximum lifespan. Danube salmon has the 1,216th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Danube salmon
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,751 bp
GC skew (G − C) / (G + C)
−0.267
AT skew (A − T) / (A + T)
+0.023

Life history

Maximum lifespan
15 years
Adult weight
28.6 kg
Female sexual maturity
5 years
Male sexual maturity
5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04459)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,751 bp
Protein-coding11,406 bp
12S rRNA947 bp
16S rRNA1,680 bp
All tRNA1,556 bp
D-loop1,096 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1972 bp25.5%29.1%15.1%30.2%45.37%−0.333−0.066
ND2NADH dehydrogenase subunit 21,048 bp26.8%28.0%12.9%32.3%45.23%−0.430−0.021
COX1Cytochrome c oxidase subunit I1,551 bp24.9%30.1%18.2%26.8%45.00%−0.192−0.095
COX2Cytochrome c oxidase subunit II691 bp27.5%27.2%16.6%28.7%45.30%−0.265+0.005
ATP8ATP synthase F0 subunit 8168 bp29.8%25.6%13.1%31.5%44.64%−0.413+0.075
ATP6ATP synthase F0 subunit 6684 bp25.9%30.0%12.4%31.7%44.15%−0.437−0.073
COX3Cytochrome c oxidase subunit III785 bp25.1%28.0%16.4%30.4%46.88%−0.299−0.055
ND3NADH dehydrogenase subunit 3349 bp22.6%30.1%14.6%32.7%47.28%−0.382−0.141
ND4LNADH dehydrogenase subunit 4L297 bp23.6%26.9%16.5%33.0%49.50%−0.333−0.067
ND4NADH dehydrogenase subunit 41,381 bp27.7%29.0%14.0%29.4%43.37%−0.356−0.023
ND5NADH dehydrogenase subunit 51,839 bp28.2%27.9%13.2%30.7%43.88%−0.398+0.006
ND6NADH dehydrogenase subunit 6522 bp37.4%14.9%13.2%34.5%47.70%−0.446+0.429
CYTBCytochrome b1,141 bp23.8%29.9%16.2%30.1%46.36%−0.301−0.114
12S rRNA12S ribosomal RNA947 bp29.7%20.1%22.9%27.3%50.26%−0.088+0.193
16S rRNA16S ribosomal RNA1,680 bp32.1%19.2%22.9%25.8%48.63%−0.060+0.251
D-loopControl region (D-loop)1,096 bp31.1%29.7%14.8%24.4%39.14%−0.245+0.022

Codon usage

Counts per codon, darker is more frequent

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU122
UUC106
Leu L17.3%
UUA109
UUG27
CUU163
CUC151
CUA167
CUG42
Ile I7.1%
AUU140
AUC131
Met M3.9%
AUA106
AUG42
Val V6.0%
GUU68
GUC61
GUA67
GUG33
Ser S6.2%
UCU57
UCC66
UCA56
UCG6
AGU14
AGC38
Pro P5.6%
CCU43
CCC97
CCA64
CCG10
Thr T8.1%
ACU81
ACC113
ACA103
ACG12
Ala A9.1%
GCU80
GCC154
GCA103
GCG8
Tyr Y2.9%
UAU45
UAC66
His H2.8%
CAU29
CAC77
Gln Q2.5%
CAA85
CAG12
Asn N3.0%
AAU52
AAC62
Lys K2.0%
AAA64
AAG11
Asp D2.0%
GAU26
GAC49
Glu E2.8%
GAA90
GAG17
Cys C0.8%
UGU12
UGC17
Trp W3.2%
UGA105
UGG17
Arg R2.0%
CGU7
CGC17
CGA48
CGG6
Gly G6.5%
GGU35
GGC75
GGA93
GGG43
Stop 0.2%
UAA6
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_025589.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,0961,096 bp–39.1%
tRNA-PheTransfer RNA1,0971,16468 bp+–
12S rRNARibosomal RNA1,1652,111947 bp+50.3%
tRNA-ValTransfer RNA2,1122,18372 bp+–
16S rRNARibosomal RNA2,1843,8631,680 bp+48.6%
tRNA-Leu (UUR)Transfer RNA3,8643,93875 bp+–
ND1Protein-coding gene3,9394,910972 bp+45.4%
tRNA-IleTransfer RNA4,9184,99073 bp+–
tRNA-GlnTransfer RNA4,9885,05871 bp−–
tRNA-MetTransfer RNA5,0585,12669 bp+–
ND2Protein-coding gene5,1276,1741,048 bp+45.2%
tRNA-TrpTransfer RNA6,1756,24672 bp+–
tRNA-AlaTransfer RNA6,2496,31769 bp−–
tRNA-AsnTransfer RNA6,3196,39173 bp−–
tRNA-CysTransfer RNA6,4276,49367 bp−–
tRNA-TyrTransfer RNA6,4946,56774 bp−–
COX1Protein-coding gene6,5668,1161,551 bp+45.0%
tRNA-Ser (UCN)Transfer RNA8,1178,18771 bp−–
tRNA-AspTransfer RNA8,1928,26372 bp+–
COX2Protein-coding gene8,2788,968691 bp+45.3%
tRNA-LysTransfer RNA8,9699,04274 bp+–
ATP8Protein-coding gene9,0449,211168 bp+44.6%
ATP6Protein-coding gene9,2029,885684 bp+44.2%
COX3Protein-coding gene9,88510,669785 bp+46.9%
tRNA-GlyTransfer RNA10,67010,73970 bp+–
ND3Protein-coding gene10,74011,088349 bp+47.3%
tRNA-ArgTransfer RNA11,08911,15870 bp+–
ND4LProtein-coding gene11,15911,455297 bp+49.5%
ND4Protein-coding gene11,44912,8291,381 bp+43.4%
tRNA-HisTransfer RNA12,83012,89869 bp+–
tRNA-Ser (AGY)Transfer RNA12,89912,96769 bp+–
tRNA-Leu (CUN)Transfer RNA12,96913,04173 bp+–
ND5Protein-coding gene13,04214,8801,839 bp+43.9%
ND6Protein-coding gene14,87715,398522 bp−47.7%
tRNA-GluTransfer RNA15,39915,46769 bp−–
CYTBProtein-coding gene15,47116,6111,141 bp+46.4%
tRNA-ThrTransfer RNA16,61216,68372 bp+–
tRNA-ProTransfer RNA16,68316,75169 bp−–

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