MitoAge

Hucho taimen

Taimen

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Maximum lifespan
16 yr
AnAge record
mtDNA size
16,833 bp
RefSeq NC_016426.1
GC content
45.38%
Whole genome
Non-coding
1,246 bp
D-loop 1,176 bp

Where Taimen sits among 2,335 species

Whole-genome GC content against maximum lifespan. Taimen has the 1,151st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Taimen
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,833 bp
GC skew (G − C) / (G + C)
−0.269
AT skew (A − T) / (A + T)
+0.024

Life history

Maximum lifespan
16 years
Adult weight
38.5 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04460)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,833 bp
Protein-coding11,406 bp
12S rRNA947 bp
16S rRNA1,680 bp
All tRNA1,554 bp
D-loop1,176 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1972 bp26.0%28.7%14.7%30.6%45.27%−0.350−0.049
ND2NADH dehydrogenase subunit 21,048 bp26.3%27.1%13.5%33.1%46.57%−0.422−0.014
COX1Cytochrome c oxidase subunit I1,551 bp25.0%30.0%18.0%27.0%44.94%−0.199−0.091
COX2Cytochrome c oxidase subunit II691 bp27.8%27.5%16.2%28.5%44.72%−0.275+0.005
ATP8ATP synthase F0 subunit 8168 bp29.8%25.6%13.1%31.5%44.64%−0.413+0.075
ATP6ATP synthase F0 subunit 6684 bp26.2%30.1%12.1%31.6%43.71%−0.445−0.070
COX3Cytochrome c oxidase subunit III785 bp24.7%28.8%16.7%29.8%46.50%−0.282−0.076
ND3NADH dehydrogenase subunit 3349 bp23.5%30.4%13.5%32.7%46.13%−0.416−0.128
ND4LNADH dehydrogenase subunit 4L297 bp23.6%26.3%16.5%33.7%50.17%−0.342−0.054
ND4NADH dehydrogenase subunit 41,381 bp27.5%28.8%14.1%29.5%43.66%−0.353−0.023
ND5NADH dehydrogenase subunit 51,839 bp28.0%28.0%13.4%30.6%43.99%−0.3890.000
ND6NADH dehydrogenase subunit 6522 bp37.7%15.1%13.0%34.1%47.13%−0.447+0.428
CYTBCytochrome b1,141 bp24.0%29.8%16.1%30.1%46.19%−0.302−0.107
12S rRNA12S ribosomal RNA947 bp29.7%20.1%22.9%27.3%50.26%−0.088+0.193
16S rRNA16S ribosomal RNA1,680 bp32.0%19.3%22.9%25.8%48.63%−0.060+0.247
D-loopControl region (D-loop)1,176 bp31.5%30.4%14.2%23.9%38.10%−0.254+0.019

Codon usage

Counts per codon, darker is more frequent

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU121
UUC107
Leu L17.3%
UUA114
UUG28
CUU159
CUC153
CUA178
CUG28
Ile I7.1%
AUU140
AUC130
Met M3.8%
AUA105
AUG41
Val V6.0%
GUU71
GUC58
GUA72
GUG28
Ser S6.3%
UCU55
UCC69
UCA56
UCG5
AGU12
AGC41
Pro P5.7%
CCU44
CCC98
CCA65
CCG9
Thr T8.0%
ACU79
ACC112
ACA102
ACG11
Ala A9.2%
GCU78
GCC159
GCA102
GCG11
Tyr Y2.9%
UAU45
UAC66
His H2.8%
CAU31
CAC75
Gln Q2.5%
CAA85
CAG12
Asn N3.0%
AAU48
AAC66
Lys K2.0%
AAA62
AAG13
Asp D1.9%
GAU26
GAC48
Glu E2.8%
GAA84
GAG23
Cys C0.7%
UGU12
UGC16
Trp W3.2%
UGA107
UGG15
Arg R2.0%
CGU7
CGC17
CGA46
CGG8
Gly G6.5%
GGU38
GGC72
GGA93
GGG44
Stop 0.2%
UAA7
UAG0
AGA0
AGG0

Genome map

38 annotated features in NC_016426.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,1761,176 bp–38.1%
tRNA-PheTransfer RNA1,1771,24468 bp+–
12S rRNARibosomal RNA1,2452,191947 bp+50.3%
tRNA-ValTransfer RNA2,1922,26372 bp+–
16S rRNARibosomal RNA2,2643,9431,680 bp+48.6%
tRNA-Leu (UUR)Transfer RNA3,9444,01875 bp+–
ND1Protein-coding gene4,0194,990972 bp+45.3%
tRNA-IleTransfer RNA4,9995,07072 bp+–
tRNA-GlnTransfer RNA5,0685,13871 bp−–
tRNA-MetTransfer RNA5,1385,20669 bp+–
ND2Protein-coding gene5,2076,2541,048 bp+46.6%
tRNA-TrpTransfer RNA6,2556,32571 bp+–
tRNA-AlaTransfer RNA6,3286,39669 bp−–
tRNA-AsnTransfer RNA6,3986,47073 bp−–
tRNA-CysTransfer RNA6,5066,57267 bp−–
tRNA-TyrTransfer RNA6,5736,64371 bp−–
COX1Protein-coding gene6,6458,1951,551 bp+44.9%
tRNA-Ser (UCN)Transfer RNA8,1968,26671 bp−–
tRNA-AspTransfer RNA8,2718,34474 bp+–
COX2Protein-coding gene8,3599,049691 bp+44.7%
tRNA-LysTransfer RNA9,0509,12374 bp+–
ATP8Protein-coding gene9,1259,292168 bp+44.6%
ATP6Protein-coding gene9,2839,966684 bp+43.7%
COX3Protein-coding gene9,96610,750785 bp+46.5%
tRNA-GlyTransfer RNA10,75110,82070 bp+–
ND3Protein-coding gene10,82111,169349 bp+46.1%
tRNA-ArgTransfer RNA11,17011,23970 bp+–
ND4LProtein-coding gene11,24011,536297 bp+50.2%
ND4Protein-coding gene11,53012,9101,381 bp+43.7%
tRNA-HisTransfer RNA12,91112,97969 bp+–
tRNA-Ser (AGY)Transfer RNA12,98013,04869 bp+–
tRNA-Leu (CUN)Transfer RNA13,05013,12273 bp+–
ND5Protein-coding gene13,12314,9611,839 bp+44.0%
ND6Protein-coding gene14,95815,479522 bp−47.1%
tRNA-GluTransfer RNA15,48015,54869 bp−–
CYTBProtein-coding gene15,55216,6921,141 bp+46.2%
tRNA-ThrTransfer RNA16,69316,76472 bp+–
tRNA-ProTransfer RNA16,76416,83370 bp−–

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