MitoAge

Hyaena hyaena

Striped hyena

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Maximum lifespan
25 yr
AnAge record
mtDNA size
17,112 bp
RefSeq NC_020669.1
GC content
42.12%
Whole genome
Non-coding
1,734 bp
D-loop 1,673 bp

Where Striped hyena sits among 2,335 species

Whole-genome GC content against maximum lifespan. Striped hyena has the 634th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Striped hyena
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,112 bp
GC skew (G − C) / (G + C)
−0.309
AT skew (A − T) / (A + T)
+0.119

Life history

Maximum lifespan
25 years
Adult weight
40 kg
Birth weight
700 g
Basal metabolic rate
31.954 W
Body temperature
37 °C
Female sexual maturity
2.2 years
Male sexual maturity
2.2 years
Gestation or incubation
90 days
Litter or clutch size
2.5

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02160)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome17,112 bp
Protein-coding11,339 bp
12S rRNA959 bp
16S rRNA1,570 bp
All tRNA1,512 bp
D-loop1,673 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp30.4%24.6%13.1%31.9%44.98%−0.419+0.106
ND2NADH dehydrogenase subunit 21,042 bp37.4%22.5%8.8%31.3%40.12%−0.560+0.250
COX1Cytochrome c oxidase subunit I1,545 bp26.3%30.6%17.9%25.2%43.11%−0.168−0.076
COX2Cytochrome c oxidase subunit II684 bp32.0%25.7%14.9%27.3%42.25%−0.294+0.109
ATP8ATP synthase F0 subunit 8204 bp39.2%24.5%8.8%27.5%36.28%−0.514+0.231
ATP6ATP synthase F0 subunit 6681 bp29.4%27.3%13.4%30.0%43.32%−0.383+0.036
COX3Cytochrome c oxidase subunit III784 bp27.2%27.2%16.3%29.3%45.66%−0.2850.000
ND3NADH dehydrogenase subunit 3347 bp31.1%26.2%13.8%28.8%42.65%−0.351+0.085
ND4LNADH dehydrogenase subunit 4L297 bp26.9%33.7%13.8%25.6%39.39%−0.299−0.111
ND4NADH dehydrogenase subunit 41,378 bp32.2%25.8%12.0%30.0%41.95%−0.429+0.110
ND5NADH dehydrogenase subunit 51,821 bp32.5%26.5%11.6%29.3%40.97%−0.432+0.101
ND6NADH dehydrogenase subunit 6528 bp39.0%20.8%11.7%28.4%40.15%−0.415+0.304
CYTBCytochrome b1,140 bp29.5%25.2%14.6%30.7%45.35%−0.354+0.079
12S rRNA12S ribosomal RNA959 bp35.2%21.5%18.8%24.5%43.27%−0.133+0.243
16S rRNA16S ribosomal RNA1,570 bp36.6%22.7%17.9%22.8%40.70%−0.121+0.235
D-loopControl region (D-loop)1,673 bp33.2%23.8%14.9%28.2%43.04%−0.308+0.165

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU93
UUC136
Leu L15.7%
UUA67
UUG23
CUU62
CUC92
CUA286
CUG68
Ile I8.5%
AUU136
AUC188
Met M6.2%
AUA171
AUG63
Val V5.0%
GUU29
GUC35
GUA93
GUG32
Ser S7.4%
UCU34
UCC72
UCA115
UCG5
AGU18
AGC37
Pro P5.3%
CCU43
CCC74
CCA76
CCG8
Thr T8.6%
ACU58
ACC103
ACA154
ACG10
Ala A6.8%
GCU28
GCC129
GCA98
GCG4
Tyr Y3.5%
UAU55
UAC79
His H2.5%
CAU22
CAC73
Gln Q2.5%
CAA79
CAG15
Asn N4.0%
AAU41
AAC111
Lys K2.7%
AAA85
AAG19
Asp D1.7%
GAU23
GAC40
Glu E2.7%
GAA79
GAG23
Cys C0.6%
UGU8
UGC15
Trp W2.8%
UGA83
UGG22
Arg R1.7%
CGU4
CGC16
CGA39
CGG6
Gly G5.7%
GGU43
GGC58
GGA88
GGG26
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

39 annotated features in NC_020669.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop2
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (42.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 39 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region1786786 bp–43.0%
tRNA-PheTransfer RNA78785670 bp+–
12S rRNARibosomal RNA8571,815959 bp+43.3%
tRNA-ValTransfer RNA1,8161,88368 bp+–
16S rRNARibosomal RNA1,8843,4531,570 bp+40.7%
tRNA-Leu (UUR)Transfer RNA3,4543,52875 bp+–
ND1Protein-coding gene3,5314,486956 bp+45.0%
tRNA-IleTransfer RNA4,4874,55569 bp+–
tRNA-GlnTransfer RNA4,5534,62573 bp−–
tRNA-MetTransfer RNA4,6274,69569 bp+–
ND2Protein-coding gene4,6965,7371,042 bp+40.1%
tRNA-TrpTransfer RNA5,7385,80568 bp+–
tRNA-AlaTransfer RNA5,8195,88769 bp−–
tRNA-AsnTransfer RNA5,8895,96173 bp−–
tRNA-CysTransfer RNA5,9946,06168 bp−–
tRNA-TyrTransfer RNA6,0626,12867 bp−–
COX1Protein-coding gene6,1307,6741,545 bp+43.1%
tRNA-Ser (UCN)Transfer RNA7,6737,74270 bp−–
tRNA-AspTransfer RNA7,7477,81569 bp+–
COX2Protein-coding gene7,8168,499684 bp+42.3%
tRNA-LysTransfer RNA8,5038,57169 bp+–
ATP8Protein-coding gene8,5738,776204 bp+36.3%
ATP6Protein-coding gene8,7349,414681 bp+43.3%
COX3Protein-coding gene9,41410,197784 bp+45.7%
tRNA-GlyTransfer RNA10,19810,26669 bp+–
ND3Protein-coding gene10,26710,613347 bp+42.7%
tRNA-ArgTransfer RNA10,61410,68067 bp+–
ND4LProtein-coding gene10,68110,977297 bp+39.4%
ND4Protein-coding gene10,97112,3481,378 bp+42.0%
tRNA-HisTransfer RNA12,34912,41870 bp+–
tRNA-Ser (AGY)Transfer RNA12,41912,47759 bp+–
tRNA-Leu (CUN)Transfer RNA12,47812,54770 bp+–
ND5Protein-coding gene12,54814,3681,821 bp+41.0%
ND6Protein-coding gene14,35214,879528 bp−40.2%
tRNA-GluTransfer RNA14,88014,94869 bp−–
CYTBProtein-coding gene14,95216,0911,140 bp+45.4%
tRNA-ThrTransfer RNA16,09216,15968 bp+–
tRNA-ProTransfer RNA16,16016,22566 bp−–
D-loopControl region16,22617,112887 bp–43.0%

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