Hydrosaurus amboinensis
Sailfin lizard
GC content
41.82%
Whole genome
Non-coding
901 bp
D-loop 823 bp
Where Sailfin lizard sits among 2,335 species
Whole-genome GC content against maximum lifespan. Sailfin lizard has the 670th longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome16,129 bp
- GC skew (G − C) / (G + C)
- −0.387
- AT skew (A − T) / (A + T)
- +0.202
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,129 bp
Protein-coding11,285 bp
12S rRNA894 bp
16S rRNA1,546 bp
All tRNA1,516 bp
D-loop823 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 42.26% | −0.422 | +0.187 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,033 bp | 41.63% | −0.540 | +0.227 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.87% | −0.325 | +0.104 | |||||
| COX2Cytochrome c oxidase subunit II | 690 bp | 42.46% | −0.392 | +0.229 | |||||
| ATP8ATP synthase F0 subunit 8 | 159 bp | 36.48% | −0.552 | +0.347 | |||||
| ATP6ATP synthase F0 subunit 6 | 682 bp | 40.18% | −0.591 | +0.216 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 44.64% | −0.383 | +0.106 | |||||
| ND3NADH dehydrogenase subunit 3 | 343 bp | 44.02% | −0.483 | +0.135 | |||||
| ND4LNADH dehydrogenase subunit 4L | 291 bp | 45.70% | −0.474 | +0.177 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,366 bp | 41.29% | −0.493 | +0.197 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,791 bp | 40.03% | −0.517 | +0.255 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 36.97% | −0.461 | +0.526 | |||||
| CYTBCytochrome b | 1,116 bp | 41.49% | −0.400 | +0.127 | |||||
| 12S rRNA12S ribosomal RNA | 894 bp | 45.30% | −0.121 | +0.264 | |||||
| 16S rRNA16S ribosomal RNA | 1,546 bp | 43.53% | −0.201 | +0.285 | |||||
| D-loopControl region (D-loop) | 823 bp | 34.99% | −0.403 | +0.073 |
Codon usage
Counts per codon, darker is more frequent3,766 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F4.9%
UUU73
UUC111
Leu L15.9%
UUA99
UUG20
CUU70
CUC88
CUA292
CUG29
Ile I7.3%
AUU99
AUC176
Met M7.2%
AUA227
AUG43
Val V3.7%
GUU33
GUC36
GUA65
GUG7
Ser S7.1%
UCU34
UCC66
UCA118
UCG3
AGU11
AGC34
Pro P5.4%
CCU18
CCC53
CCA124
CCG10
Thr T11.2%
ACU49
ACC160
ACA208
ACG5
Ala A7.5%
GCU32
GCC128
GCA115
GCG6
Tyr Y3.4%
UAU35
UAC94
His H2.5%
CAU19
CAC76
Gln Q2.8%
CAA98
CAG8
Asn N4.2%
AAU27
AAC131
Lys K2.9%
AAA106
AAG3
Asp D1.5%
GAU12
GAC45
Glu E2.2%
GAA71
GAG13
Cys C0.7%
UGU8
UGC19
Trp W2.5%
UGA83
UGG12
Arg R1.5%
CGU1
CGC6
CGA47
CGG4
Gly G5.3%
GGU15
GGC50
GGA96
GGG37
Stop 0.2%
UAA4
UAG3
AGA0
AGG1
Genome map
38 annotated features in NC_014178.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 964 | 894 bp | + | 45.3% |
| tRNA-Val | Transfer RNA | 965 | 1,032 | 68 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,033 | 2,578 | 1,546 bp | + | 43.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,579 | 2,653 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,655 | 3,629 | 975 bp | + | 42.3% |
| tRNA-Gln | Transfer RNA | 3,626 | 3,697 | 72 bp | − | – |
| tRNA-Ile | Transfer RNA | 3,703 | 3,773 | 71 bp | + | – |
| tRNA-Met | Transfer RNA | 3,780 | 3,846 | 67 bp | + | – |
| ND2 | Protein-coding gene | 3,850 | 4,882 | 1,033 bp | + | 41.6% |
| tRNA-Trp | Transfer RNA | 4,883 | 4,957 | 75 bp | + | – |
| tRNA-Ala | Transfer RNA | 4,962 | 5,028 | 67 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,029 | 5,102 | 74 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,121 | 5,181 | 61 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,182 | 5,250 | 69 bp | − | – |
| COX1 | Protein-coding gene | 5,251 | 6,801 | 1,551 bp | + | 44.9% |
| tRNA-Ser (UCN) | Transfer RNA | 6,793 | 6,863 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 6,866 | 6,934 | 69 bp | + | – |
| COX2 | Protein-coding gene | 6,938 | 7,627 | 690 bp | + | 42.5% |
| tRNA-Lys | Transfer RNA | 7,645 | 7,709 | 65 bp | + | – |
| ATP8 | Protein-coding gene | 7,712 | 7,870 | 159 bp | + | 36.5% |
| ATP6 | Protein-coding gene | 7,864 | 8,545 | 682 bp | + | 40.2% |
| COX3 | Protein-coding gene | 8,546 | 9,329 | 784 bp | + | 44.6% |
| tRNA-Gly | Transfer RNA | 9,330 | 9,397 | 68 bp | + | – |
| ND3 | Protein-coding gene | 9,398 | 9,740 | 343 bp | + | 44.0% |
| tRNA-Arg | Transfer RNA | 9,741 | 9,808 | 68 bp | + | – |
| ND4L | Protein-coding gene | 9,809 | 10,099 | 291 bp | + | 45.7% |
| ND4 | Protein-coding gene | 10,093 | 11,458 | 1,366 bp | + | 41.3% |
| tRNA-His | Transfer RNA | 11,459 | 11,527 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,528 | 11,589 | 62 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,593 | 11,664 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,667 | 13,457 | 1,791 bp | + | 40.0% |
| ND6 | Protein-coding gene | 13,454 | 13,975 | 522 bp | − | 37.0% |
| tRNA-Glu | Transfer RNA | 13,977 | 14,045 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,046 | 15,161 | 1,116 bp | + | 41.5% |
| tRNA-Thr | Transfer RNA | 15,172 | 15,240 | 69 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,242 | 15,306 | 65 bp | − | – |
| D-loop | Control region | 15,307 | 16,129 | 823 bp | – | 35.0% |