MitoAge

Hypentelium nigricans

Northern hog sucker

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Maximum lifespan
11 yr
AnAge record
mtDNA size
16,625 bp
RefSeq NC_008676.1
GC content
42.94%
Whole genome
Non-coding
1,026 bp
D-loop 955 bp

Where Northern hog sucker sits among 2,335 species

Whole-genome GC content against maximum lifespan. Northern hog sucker has the 1,485th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Northern hog sucker
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,625 bp
GC skew (G − C) / (G + C)
−0.193
AT skew (A − T) / (A + T)
+0.047

Life history

Maximum lifespan
11 years
Adult weight
700 g
Female sexual maturity
2.7 years
Male sexual maturity
700 days

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03877)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,625 bp
Protein-coding11,413 bp
12S rRNA950 bp
16S rRNA1,682 bp
All tRNA1,560 bp
D-loop955 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp27.4%29.7%16.8%26.1%42.87%−0.215−0.041
ND2NADH dehydrogenase subunit 21,047 bp28.5%25.8%15.7%30.1%45.75%−0.315+0.049
COX1Cytochrome c oxidase subunit I1,551 bp26.6%30.6%18.1%24.7%42.81%−0.154−0.071
COX2Cytochrome c oxidase subunit II691 bp30.2%28.9%15.8%25.0%40.81%−0.227+0.022
ATP8ATP synthase F0 subunit 8168 bp35.7%28.0%12.5%23.8%36.31%−0.311+0.122
ATP6ATP synthase F0 subunit 6684 bp28.8%31.0%15.1%25.1%40.21%−0.251−0.037
COX3Cytochrome c oxidase subunit III786 bp27.0%28.2%17.3%27.5%44.78%−0.227−0.023
ND3NADH dehydrogenase subunit 3351 bp27.6%32.2%14.8%25.4%40.17%−0.262−0.076
ND4LNADH dehydrogenase subunit 4L297 bp25.9%30.6%16.2%27.3%43.43%−0.256−0.083
ND4NADH dehydrogenase subunit 41,383 bp29.4%28.4%15.7%26.5%42.16%−0.256+0.018
ND5NADH dehydrogenase subunit 51,839 bp30.9%29.3%13.8%25.9%39.75%−0.305+0.027
ND6NADH dehydrogenase subunit 6522 bp37.7%16.7%15.3%30.3%45.59%−0.328+0.387
CYTBCytochrome b1,141 bp26.7%30.1%16.1%27.0%43.12%−0.252−0.060
12S rRNA12S ribosomal RNA950 bp30.8%19.9%23.3%26.0%49.26%−0.056+0.216
16S rRNA16S ribosomal RNA1,682 bp34.7%20.7%21.7%22.9%44.65%−0.028+0.252
D-loopControl region (D-loop)955 bp33.2%30.3%15.7%20.8%36.55%−0.140+0.046

Codon usage

Counts per codon, darker is more frequent

3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU123
UUC98
Leu L16.5%
UUA150
UUG19
CUU127
CUC59
CUA225
CUG50
Ile I7.3%
AUU206
AUC72
Met M4.4%
AUA100
AUG68
Val V6.2%
GUU55
GUC38
GUA107
GUG36
Ser S6.4%
UCU50
UCC60
UCA70
UCG11
AGU13
AGC40
Pro P5.5%
CCU53
CCC51
CCA95
CCG12
Thr T7.7%
ACU67
ACC92
ACA121
ACG15
Ala A9.2%
GCU72
GCC146
GCA120
GCG11
Tyr Y3.0%
UAU59
UAC57
His H2.8%
CAU42
CAC63
Gln Q2.6%
CAA81
CAG18
Asn N3.2%
AAU55
AAC67
Lys K2.0%
AAA63
AAG14
Asp D2.0%
GAU27
GAC48
Glu E2.8%
GAA85
GAG20
Cys C0.7%
UGU12
UGC14
Trp W3.2%
UGA101
UGG20
Arg R2.0%
CGU7
CGC9
CGA44
CGG16
Gly G6.5%
GGU35
GGC42
GGA125
GGG44
Stop 0.3%
UAA7
UAG4
AGA0
AGG0

Genome map

38 annotated features in NC_008676.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (42.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,019950 bp+49.3%
tRNA-ValTransfer RNA1,0201,09172 bp+–
16S rRNARibosomal RNA1,0922,7731,682 bp+44.7%
tRNA-Leu (UUR)Transfer RNA2,7742,84875 bp+–
ND1Protein-coding gene2,8503,824975 bp+42.9%
tRNA-IleTransfer RNA3,8353,90672 bp+–
tRNA-GlnTransfer RNA3,9053,97571 bp−–
tRNA-MetTransfer RNA3,9774,04569 bp+–
ND2Protein-coding gene4,0465,0921,047 bp+45.8%
tRNA-TrpTransfer RNA5,0915,16373 bp+–
tRNA-AlaTransfer RNA5,1655,23369 bp−–
tRNA-AsnTransfer RNA5,2355,30773 bp−–
tRNA-CysTransfer RNA5,3405,40465 bp−–
tRNA-TyrTransfer RNA5,4065,47671 bp−–
COX1Protein-coding gene5,4787,0281,551 bp+42.8%
tRNA-Ser (UCN)Transfer RNA7,0307,10071 bp−–
tRNA-AspTransfer RNA7,1037,17573 bp+–
COX2Protein-coding gene7,1897,879691 bp+40.8%
tRNA-LysTransfer RNA7,8807,95475 bp+–
ATP8Protein-coding gene7,9568,123168 bp+36.3%
ATP6Protein-coding gene8,1148,797684 bp+40.2%
COX3Protein-coding gene8,7979,582786 bp+44.8%
tRNA-GlyTransfer RNA9,5829,65372 bp+–
ND3Protein-coding gene9,65410,004351 bp+40.2%
tRNA-ArgTransfer RNA10,00310,07270 bp+–
ND4LProtein-coding gene10,07310,369297 bp+43.4%
ND4Protein-coding gene10,36311,7451,383 bp+42.2%
tRNA-HisTransfer RNA11,74511,81470 bp+–
tRNA-Ser (AGY)Transfer RNA11,81511,88268 bp+–
tRNA-Leu (CUN)Transfer RNA11,88411,95673 bp+–
ND5Protein-coding gene11,95713,7951,839 bp+39.8%
ND6Protein-coding gene13,79214,313522 bp−45.6%
tRNA-GluTransfer RNA14,31414,38269 bp−–
CYTBProtein-coding gene14,38815,5281,141 bp+43.1%
tRNA-ThrTransfer RNA15,52915,60072 bp+–
tRNA-ProTransfer RNA15,60015,67071 bp−–
D-loopControl region15,67116,625955 bp–36.6%

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