Hypophthalmichthys molitrix
Silver carp
GC content
42.64%
Whole genome
Non-coding
1,001 bp
D-loop 936 bp
Where Silver carp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Silver carp has the 919th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,620 bp
- GC skew (G − C) / (G + C)
- −0.261
- AT skew (A − T) / (A + T)
- +0.109
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,620 bp
Protein-coding11,406 bp
12S rRNA962 bp
16S rRNA1,691 bp
All tRNA1,562 bp
D-loop936 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 44.00% | −0.338 | +0.114 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 43.08% | −0.446 | +0.201 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 42.88% | −0.197 | −0.032 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.86% | −0.232 | +0.076 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 35.76% | −0.492 | +0.245 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.96% | −0.380 | +0.018 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.33% | −0.253 | +0.007 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.42% | −0.346 | +0.037 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.79% | −0.338 | −0.006 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.04% | −0.318 | +0.074 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 41.61% | −0.395 | +0.108 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 41.38% | −0.491 | +0.477 | |||||
| CYTBCytochrome b | 1,141 bp | 41.89% | −0.331 | +0.029 | |||||
| 12S rRNA12S ribosomal RNA | 962 bp | 49.38% | −0.091 | +0.236 | |||||
| 16S rRNA16S ribosomal RNA | 1,691 bp | 42.87% | −0.073 | +0.292 | |||||
| D-loopControl region (D-loop) | 936 bp | 31.62% | −0.182 | 0.000 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU82
UUC143
Leu L16.3%
UUA98
UUG21
CUU100
CUC86
CUA274
CUG40
Ile I7.7%
AUU165
AUC128
Met M4.7%
AUA134
AUG46
Val V5.7%
GUU53
GUC33
GUA109
GUG22
Ser S6.3%
UCU43
UCC62
UCA77
UCG3
AGU13
AGC42
Pro P5.6%
CCU32
CCC44
CCA131
CCG8
Thr T8.3%
ACU51
ACC102
ACA152
ACG11
Ala A8.7%
GCU54
GCC135
GCA133
GCG9
Tyr Y3.0%
UAU53
UAC62
His H2.8%
CAU24
CAC81
Gln Q2.5%
CAA88
CAG8
Asn N3.2%
AAU46
AAC76
Lys K2.0%
AAA73
AAG5
Asp D2.0%
GAU24
GAC52
Glu E2.7%
GAA85
GAG18
Cys C0.7%
UGU11
UGC14
Trp W3.2%
UGA112
UGG9
Arg R2.0%
CGU11
CGC12
CGA48
CGG5
Gly G6.4%
GGU34
GGC40
GGA137
GGG34
Stop 0.2%
UAA6
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_010156.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,031 | 962 bp | + | 49.4% |
| tRNA-Val | Transfer RNA | 1,032 | 1,103 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,104 | 2,794 | 1,691 bp | + | 42.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,795 | 2,870 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,872 | 3,846 | 975 bp | + | 44.0% |
| tRNA-Ile | Transfer RNA | 3,851 | 3,922 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,921 | 3,991 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,993 | 4,061 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,062 | 5,108 | 1,047 bp | + | 43.1% |
| tRNA-Trp | Transfer RNA | 5,107 | 5,177 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,179 | 5,247 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,249 | 5,321 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,354 | 5,421 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,423 | 5,493 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,495 | 7,045 | 1,551 bp | + | 42.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,046 | 7,115 | 70 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,120 | 7,193 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,207 | 7,897 | 691 bp | + | 44.9% |
| tRNA-Lys | Transfer RNA | 7,898 | 7,973 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,975 | 8,139 | 165 bp | + | 35.8% |
| ATP6 | Protein-coding gene | 8,133 | 8,816 | 684 bp | + | 42.0% |
| COX3 | Protein-coding gene | 8,816 | 9,600 | 785 bp | + | 44.3% |
| tRNA-Gly | Transfer RNA | 9,601 | 9,673 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,674 | 10,022 | 349 bp | + | 46.4% |
| tRNA-Arg | Transfer RNA | 10,023 | 10,091 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,092 | 10,388 | 297 bp | + | 45.8% |
| ND4 | Protein-coding gene | 10,382 | 11,763 | 1,382 bp | + | 42.0% |
| tRNA-His | Transfer RNA | 11,764 | 11,832 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,833 | 11,901 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,903 | 11,975 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,976 | 13,811 | 1,836 bp | + | 41.6% |
| ND6 | Protein-coding gene | 13,808 | 14,329 | 522 bp | − | 41.4% |
| tRNA-Glu | Transfer RNA | 14,330 | 14,398 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,403 | 15,543 | 1,141 bp | + | 41.9% |
| tRNA-Thr | Transfer RNA | 15,544 | 15,615 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,615 | 15,684 | 70 bp | − | – |
| D-loop | Control region | 15,685 | 16,620 | 936 bp | – | 31.6% |