Hypophthalmichthys nobilis
Bighead carp
GC content
43.04%
Whole genome
Non-coding
1,003 bp
D-loop 938 bp
Where Bighead carp sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bighead carp has the 913th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,621 bp
- GC skew (G − C) / (G + C)
- −0.259
- AT skew (A − T) / (A + T)
- +0.111
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,621 bp
Protein-coding11,404 bp
12S rRNA959 bp
16S rRNA1,691 bp
All tRNA1,564 bp
D-loop938 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 43.49% | −0.311 | +0.082 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 43.25% | −0.465 | +0.204 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.01% | −0.181 | −0.045 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.86% | −0.219 | +0.071 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 37.58% | −0.484 | +0.262 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.40% | −0.359 | +0.005 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.46% | −0.244 | +0.009 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.28% | −0.370 | +0.043 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.47% | −0.333 | −0.006 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,382 bp | 42.98% | −0.313 | +0.071 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 41.34% | −0.410 | +0.123 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 43.68% | −0.421 | +0.469 | |||||
| CYTBCytochrome b | 1,141 bp | 43.21% | −0.331 | +0.037 | |||||
| 12S rRNA12S ribosomal RNA | 959 bp | 49.53% | −0.078 | +0.236 | |||||
| 16S rRNA16S ribosomal RNA | 1,691 bp | 42.93% | −0.063 | +0.289 | |||||
| D-loopControl region (D-loop) | 938 bp | 32.62% | −0.261 | +0.051 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU82
UUC144
Leu L16.3%
UUA99
UUG16
CUU102
CUC84
CUA271
CUG49
Ile I7.6%
AUU163
AUC125
Met M4.6%
AUA129
AUG46
Val V5.9%
GUU55
GUC35
GUA109
GUG26
Ser S6.3%
UCU33
UCC68
UCA81
UCG4
AGU11
AGC44
Pro P5.7%
CCU27
CCC53
CCA131
CCG4
Thr T8.2%
ACU46
ACC106
ACA149
ACG11
Ala A8.8%
GCU64
GCC126
GCA128
GCG15
Tyr Y3.0%
UAU50
UAC65
His H2.8%
CAU28
CAC77
Gln Q2.5%
CAA90
CAG6
Asn N3.2%
AAU38
AAC84
Lys K2.1%
AAA73
AAG6
Asp D2.0%
GAU19
GAC57
Glu E2.7%
GAA85
GAG18
Cys C0.7%
UGU9
UGC16
Trp W3.2%
UGA113
UGG8
Arg R2.0%
CGU12
CGC11
CGA48
CGG5
Gly G6.4%
GGU37
GGC37
GGA133
GGG37
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_010194.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,029 | 959 bp | + | 49.5% |
| tRNA-Val | Transfer RNA | 1,030 | 1,101 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,102 | 2,792 | 1,691 bp | + | 42.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,793 | 2,868 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,870 | 3,844 | 975 bp | + | 43.5% |
| tRNA-Ile | Transfer RNA | 3,849 | 3,920 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,919 | 3,989 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,991 | 4,059 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,060 | 5,104 | 1,045 bp | + | 43.3% |
| tRNA-Trp | Transfer RNA | 5,105 | 5,175 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,177 | 5,245 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,247 | 5,319 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,352 | 5,419 | 68 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,421 | 5,491 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,493 | 7,043 | 1,551 bp | + | 43.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,044 | 7,114 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,118 | 7,191 | 74 bp | + | – |
| COX2 | Protein-coding gene | 7,205 | 7,895 | 691 bp | + | 44.9% |
| tRNA-Lys | Transfer RNA | 7,896 | 7,971 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,973 | 8,137 | 165 bp | + | 37.6% |
| ATP6 | Protein-coding gene | 8,131 | 8,814 | 684 bp | + | 42.4% |
| COX3 | Protein-coding gene | 8,814 | 9,598 | 785 bp | + | 44.5% |
| tRNA-Gly | Transfer RNA | 9,599 | 9,671 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,672 | 10,020 | 349 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 10,021 | 10,090 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,091 | 10,387 | 297 bp | + | 46.5% |
| ND4 | Protein-coding gene | 10,381 | 11,762 | 1,382 bp | + | 43.0% |
| tRNA-His | Transfer RNA | 11,763 | 11,831 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,832 | 11,900 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,902 | 11,974 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,975 | 13,810 | 1,836 bp | + | 41.3% |
| ND6 | Protein-coding gene | 13,807 | 14,328 | 522 bp | − | 43.7% |
| tRNA-Glu | Transfer RNA | 14,329 | 14,397 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,402 | 15,542 | 1,141 bp | + | 43.2% |
| tRNA-Thr | Transfer RNA | 15,543 | 15,614 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,614 | 15,683 | 70 bp | − | – |
| D-loop | Control region | 15,684 | 16,621 | 938 bp | – | 32.6% |