Hypoptychus dybowskii
Korean sandeel
GC content
47.44%
Whole genome
Non-coding
903 bp
D-loop 838 bp
Where Korean sandeel sits among 2,335 species
Whole-genome GC content against maximum lifespan. Korean sandeel has the 2,300th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,479 bp
- GC skew (G − C) / (G + C)
- −0.214
- AT skew (A − T) / (A + T)
- −0.065
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,479 bp
Protein-coding11,408 bp
12S rRNA942 bp
16S rRNA1,685 bp
All tRNA1,542 bp
D-loop838 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.31% | −0.282 | −0.246 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 49.38% | −0.358 | −0.185 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.33% | −0.178 | −0.172 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 47.18% | −0.190 | −0.047 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 50.00% | −0.429 | −0.071 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 44.66% | −0.331 | −0.217 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 51.21% | −0.244 | −0.164 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.57% | −0.202 | −0.307 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.85% | −0.312 | −0.273 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.07% | −0.277 | −0.160 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.09% | −0.284 | −0.128 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 52.49% | −0.263 | +0.274 | |||||
| CYTBCytochrome b | 1,141 bp | 47.06% | −0.274 | −0.192 | |||||
| 12S rRNA12S ribosomal RNA | 942 bp | 49.26% | −0.069 | +0.167 | |||||
| 16S rRNA16S ribosomal RNA | 1,685 bp | 47.00% | −0.078 | +0.178 | |||||
| D-loopControl region (D-loop) | 838 bp | 39.50% | −0.136 | +0.061 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU139
UUC106
Leu L16.9%
UUA84
UUG51
CUU202
CUC147
CUA116
CUG45
Ile I6.9%
AUU150
AUC113
Met M3.7%
AUA69
AUG73
Val V6.1%
GUU93
GUC59
GUA43
GUG38
Ser S6.9%
UCU68
UCC75
UCA44
UCG16
AGU21
AGC39
Pro P5.9%
CCU67
CCC97
CCA42
CCG18
Thr T7.7%
ACU79
ACC119
ACA77
ACG17
Ala A9.2%
GCU114
GCC132
GCA89
GCG15
Tyr Y2.7%
UAU34
UAC70
His H2.8%
CAU26
CAC80
Gln Q2.6%
CAA60
CAG39
Asn N2.8%
AAU34
AAC73
Lys K1.9%
AAA38
AAG33
Asp D2.1%
GAU24
GAC55
Glu E2.5%
GAA46
GAG51
Cys C0.8%
UGU10
UGC19
Trp W3.1%
UGA69
UGG48
Arg R2.1%
CGU18
CGC21
CGA27
CGG14
Gly G6.7%
GGU58
GGC100
GGA38
GGG58
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
38 annotated features in NC_004400.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,010 | 942 bp | + | 49.3% |
| tRNA-Val | Transfer RNA | 1,011 | 1,082 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,083 | 2,767 | 1,685 bp | + | 47.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,768 | 2,840 | 73 bp | + | – |
| ND1 | Protein-coding gene | 2,841 | 3,815 | 975 bp | + | 48.3% |
| tRNA-Ile | Transfer RNA | 3,820 | 3,889 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,889 | 3,959 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,959 | 4,027 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,028 | 5,074 | 1,047 bp | + | 49.4% |
| tRNA-Trp | Transfer RNA | 5,074 | 5,142 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,144 | 5,212 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,214 | 5,286 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,323 | 5,387 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,388 | 5,457 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,459 | 7,009 | 1,551 bp | + | 45.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,010 | 7,080 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,084 | 7,155 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,163 | 7,853 | 691 bp | + | 47.2% |
| tRNA-Lys | Transfer RNA | 7,854 | 7,927 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,929 | 8,096 | 168 bp | + | 50.0% |
| ATP6 | Protein-coding gene | 8,087 | 8,769 | 683 bp | + | 44.7% |
| COX3 | Protein-coding gene | 8,770 | 9,554 | 785 bp | + | 51.2% |
| tRNA-Gly | Transfer RNA | 9,555 | 9,625 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,626 | 9,974 | 349 bp | + | 49.6% |
| tRNA-Arg | Transfer RNA | 9,975 | 10,043 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,044 | 10,340 | 297 bp | + | 51.9% |
| ND4 | Protein-coding gene | 10,334 | 11,714 | 1,381 bp | + | 47.1% |
| tRNA-His | Transfer RNA | 11,715 | 11,782 | 68 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,783 | 11,850 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,855 | 11,926 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,930 | 13,768 | 1,839 bp | + | 47.1% |
| ND6 | Protein-coding gene | 13,765 | 14,286 | 522 bp | − | 52.5% |
| tRNA-Glu | Transfer RNA | 14,287 | 14,355 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,360 | 15,500 | 1,141 bp | + | 47.1% |
| tRNA-Thr | Transfer RNA | 15,501 | 15,572 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,572 | 15,641 | 70 bp | − | – |
| D-loop | Control region | 15,642 | 16,479 | 838 bp | – | 39.5% |