MitoAge

Ictalurus punctatus

Channel catfish

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Maximum lifespan
16 yr
AnAge record
mtDNA size
16,497 bp
RefSeq NC_003489.1
GC content
44.62%
Whole genome
Non-coding
948 bp
D-loop 885 bp

Where Channel catfish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Channel catfish has the 1,153rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Channel catfish
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,497 bp
GC skew (G − C) / (G + C)
−0.282
AT skew (A − T) / (A + T)
+0.055

Life history

Maximum lifespan
16 years
Adult weight
13.7 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04569)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,497 bp
Protein-coding11,385 bp
12S rRNA953 bp
16S rRNA1,660 bp
All tRNA1,555 bp
D-loop885 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp27.1%28.6%14.5%29.8%44.31%−0.347−0.028
ND2NADH dehydrogenase subunit 21,047 bp30.7%23.0%13.4%33.0%46.32%−0.423+0.142
COX1Cytochrome c oxidase subunit I1,551 bp24.8%28.9%18.7%27.6%46.29%−0.192−0.078
COX2Cytochrome c oxidase subunit II691 bp28.8%26.6%16.1%28.5%44.57%−0.279+0.039
ATP8ATP synthase F0 subunit 8168 bp35.1%25.6%12.5%26.8%39.29%−0.364+0.157
ATP6ATP synthase F0 subunit 6684 bp29.1%27.0%12.3%31.6%43.86%−0.440+0.036
COX3Cytochrome c oxidase subunit III784 bp25.6%27.7%17.0%29.7%46.68%−0.273−0.038
ND3NADH dehydrogenase subunit 3351 bp22.2%29.6%16.0%32.2%48.15%−0.337−0.143
ND4LNADH dehydrogenase subunit 4L297 bp24.2%28.3%15.8%31.6%47.48%−0.333−0.077
ND4NADH dehydrogenase subunit 41,381 bp28.1%28.1%14.6%29.3%43.81%−0.3360.000
ND5NADH dehydrogenase subunit 51,824 bp29.5%27.8%13.3%29.4%42.71%−0.376+0.030
ND6NADH dehydrogenase subunit 6516 bp38.2%15.1%10.5%36.2%46.71%−0.552+0.433
CYTBCytochrome b1,138 bp26.4%28.1%14.5%31.0%45.52%−0.363−0.032
12S rRNA12S ribosomal RNA953 bp29.6%21.2%21.4%27.8%49.21%−0.130+0.165
16S rRNA16S ribosomal RNA1,660 bp34.0%21.6%19.9%24.4%44.34%−0.101+0.223
D-loopControl region (D-loop)885 bp31.9%31.4%13.4%23.3%36.72%−0.268+0.007

Codon usage

Counts per codon, darker is more frequent

3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.9%
UUU108
UUC118
Leu L16.7%
UUA112
UUG22
CUU92
CUC103
CUA254
CUG51
Ile I7.8%
AUU179
AUC118
Met M4.5%
AUA113
AUG59
Val V5.8%
GUU61
GUC46
GUA85
GUG30
Ser S6.1%
UCU38
UCC81
UCA61
UCG7
AGU9
AGC37
Pro P5.5%
CCU34
CCC99
CCA68
CCG8
Thr T7.7%
ACU52
ACC123
ACA110
ACG9
Ala A9.0%
GCU54
GCC174
GCA99
GCG15
Tyr Y3.0%
UAU49
UAC64
His H2.9%
CAU31
CAC78
Gln Q2.6%
CAA93
CAG7
Asn N3.2%
AAU47
AAC73
Lys K2.1%
AAA67
AAG13
Asp D2.1%
GAU29
GAC49
Glu E2.5%
GAA81
GAG15
Cys C0.7%
UGU10
UGC17
Trp W3.2%
UGA92
UGG30
Arg R1.9%
CGU6
CGC19
CGA43
CGG6
Gly G6.4%
GGU26
GGC86
GGA83
GGG49
Stop 0.2%
UAA6
UAG3
AGA0
AGG0

Genome map

38 annotated features in NC_003489.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (44.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region1885885 bp–36.7%
tRNA-PheTransfer RNA88695570 bp+–
12S rRNARibosomal RNA9561,908953 bp+49.2%
tRNA-ValTransfer RNA1,9091,98072 bp+–
16S rRNARibosomal RNA1,9813,6401,660 bp+44.3%
tRNA-Leu (UUR)Transfer RNA3,6413,71575 bp+–
ND1Protein-coding gene3,7164,690975 bp+44.3%
tRNA-IleTransfer RNA4,6924,76372 bp+–
tRNA-GlnTransfer RNA4,7634,83371 bp−–
tRNA-MetTransfer RNA4,8334,90270 bp+–
ND2Protein-coding gene4,9035,9491,047 bp+46.3%
tRNA-TrpTransfer RNA5,9486,01871 bp+–
tRNA-AlaTransfer RNA6,0216,08969 bp−–
tRNA-AsnTransfer RNA6,0916,16373 bp−–
tRNA-CysTransfer RNA6,1956,26167 bp−–
tRNA-TyrTransfer RNA6,2646,33370 bp−–
COX1Protein-coding gene6,3357,8851,551 bp+46.3%
tRNA-Ser (UCN)Transfer RNA7,8867,95671 bp−–
tRNA-AspTransfer RNA7,9618,03373 bp+–
COX2Protein-coding gene8,0488,738691 bp+44.6%
tRNA-LysTransfer RNA8,7398,81274 bp+–
ATP8Protein-coding gene8,8148,981168 bp+39.3%
ATP6Protein-coding gene8,9729,655684 bp+43.9%
COX3Protein-coding gene9,65510,438784 bp+46.7%
tRNA-GlyTransfer RNA10,43910,51072 bp+–
ND3Protein-coding gene10,51110,861351 bp+48.2%
tRNA-ArgTransfer RNA10,86010,92970 bp+–
ND4LProtein-coding gene10,93011,226297 bp+47.5%
ND4Protein-coding gene11,22012,6001,381 bp+43.8%
tRNA-HisTransfer RNA12,60112,67070 bp+–
tRNA-Ser (AGY)Transfer RNA12,67312,73664 bp+–
tRNA-Leu (CUN)Transfer RNA12,74012,81273 bp−–
ND5Protein-coding gene12,81314,6361,824 bp+42.7%
ND6Protein-coding gene14,63315,148516 bp−46.7%
tRNA-GluTransfer RNA15,14915,21769 bp−–
CYTBProtein-coding gene15,21916,3561,138 bp+45.5%
tRNA-ThrTransfer RNA16,35716,42872 bp+–
tRNA-ProTransfer RNA16,42716,49771 bp−–

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