MitoAge

Ictidomys tridecemlineatus

Thirteen-lined ground squirrel

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Maximum lifespan
7.9 yr
AnAge record
mtDNA size
16,458 bp
RefSeq NC_027278.1
GC content
36.32%
Whole genome
Non-coding
1,091 bp
D-loop 1,016 bp

Where Thirteen-lined ground squirrel sits among 2,335 species

Whole-genome GC content against maximum lifespan. Thirteen-lined ground squirrel has the 1,783rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Thirteen-lined ground squirrel
  • This species
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  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,458 bp
GC skew (G − C) / (G + C)
−0.298
AT skew (A − T) / (A + T)
+0.008

Life history

Maximum lifespan
7.9 years
Adult weight
172.7 g
Birth weight
3.2 g
Basal metabolic rate
0.983 W
Body temperature
35.7 °C
Female sexual maturity
354 days
Male sexual maturity
225 days
Gestation or incubation
28 days
Litter or clutch size
7
Litters per year
1.2

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03136)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,458 bp
Protein-coding11,330 bp
12S rRNA964 bp
16S rRNA1,565 bp
All tRNA1,508 bp
D-loop1,016 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1956 bp31.2%32.8%11.0%25.0%35.98%−0.390−0.026
ND2NADH dehydrogenase subunit 21,042 bp34.7%30.3%8.6%26.3%34.93%−0.505+0.068
COX1Cytochrome c oxidase subunit I1,542 bp28.1%34.4%15.8%21.6%37.42%−0.154−0.101
COX2Cytochrome c oxidase subunit II684 bp31.4%30.6%13.3%24.7%38.01%−0.300+0.014
ATP8ATP synthase F0 subunit 8207 bp34.8%33.3%6.8%25.1%31.88%−0.576+0.021
ATP6ATP synthase F0 subunit 6681 bp30.1%34.8%10.1%25.0%35.10%−0.423−0.072
COX3Cytochrome c oxidase subunit III784 bp27.6%31.6%15.1%25.8%40.82%−0.263−0.069
ND3NADH dehydrogenase subunit 3347 bp27.7%36.0%12.4%23.9%36.31%−0.317−0.131
ND4LNADH dehydrogenase subunit 4L297 bp28.6%39.1%11.1%21.2%32.32%−0.313−0.154
ND4NADH dehydrogenase subunit 41,378 bp31.4%34.0%10.4%24.2%34.62%−0.396−0.039
ND5NADH dehydrogenase subunit 51,818 bp31.9%32.5%10.0%25.6%35.64%−0.438−0.009
ND6NADH dehydrogenase subunit 6525 bp40.0%25.3%7.0%27.6%34.67%−0.593+0.224
CYTBCytochrome b1,140 bp27.8%32.4%13.0%26.8%39.83%−0.348−0.076
12S rRNA12S ribosomal RNA964 bp35.4%26.7%17.4%20.5%37.97%−0.082+0.140
16S rRNA16S ribosomal RNA1,565 bp36.5%27.7%16.5%19.4%35.85%−0.080+0.137
D-loopControl region (D-loop)1,016 bp30.9%32.1%12.4%24.6%37.01%−0.330−0.019

Codon usage

Counts per codon, darker is more frequent

3,798 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.8%
UUU162
UUC97
Leu L16.1%
UUA170
UUG12
CUU134
CUC83
CUA199
CUG13
Ile I8.7%
AUU228
AUC104
Met M6.1%
AUA205
AUG28
Val V5.0%
GUU56
GUC33
GUA92
GUG9
Ser S7.8%
UCU67
UCC57
UCA119
UCG10
AGU17
AGC27
Pro P5.2%
CCU71
CCC61
CCA61
CCG5
Thr T7.7%
ACU89
ACC72
ACA121
ACG11
Ala A6.2%
GCU81
GCC61
GCA90
GCG4
Tyr Y3.5%
UAU81
UAC52
His H2.5%
CAU43
CAC53
Gln Q2.1%
CAA75
CAG4
Asn N4.1%
AAU79
AAC76
Lys K2.5%
AAA83
AAG11
Asp D1.9%
GAU34
GAC37
Glu E2.6%
GAA77
GAG20
Cys C0.8%
UGU10
UGC19
Trp W2.7%
UGA99
UGG5
Arg R1.8%
CGU16
CGC5
CGA46
CGG0
Gly G5.7%
GGU38
GGC41
GGA116
GGG21
Stop 0.2%
UAA5
UAG1
AGA2
AGG0

Genome map

38 annotated features in NC_027278.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (36.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17171 bp+–
12S rRNARibosomal RNA721,035964 bp+38.0%
tRNA-ValTransfer RNA1,0361,10570 bp+–
16S rRNARibosomal RNA1,1062,6701,565 bp+35.9%
tRNA-Leu (UUR)Transfer RNA2,6712,74474 bp+–
ND1Protein-coding gene2,7483,703956 bp+36.0%
tRNA-IleTransfer RNA3,7043,77269 bp+–
tRNA-GlnTransfer RNA3,7703,84172 bp−–
tRNA-MetTransfer RNA3,8453,91369 bp+–
ND2Protein-coding gene3,9144,9551,042 bp+34.9%
tRNA-TrpTransfer RNA4,9565,02368 bp+–
tRNA-AlaTransfer RNA5,0275,09569 bp−–
tRNA-AsnTransfer RNA5,1015,17373 bp−–
tRNA-CysTransfer RNA5,2065,27267 bp−–
tRNA-TyrTransfer RNA5,2735,33866 bp−–
COX1Protein-coding gene5,3476,8881,542 bp+37.4%
tRNA-Ser (UCN)Transfer RNA6,8916,95969 bp−–
tRNA-AspTransfer RNA6,9637,03169 bp+–
COX2Protein-coding gene7,0327,715684 bp+38.0%
tRNA-LysTransfer RNA7,7197,78466 bp+–
ATP8Protein-coding gene7,7867,992207 bp+31.9%
ATP6Protein-coding gene7,9478,627681 bp+35.1%
COX3Protein-coding gene8,6279,410784 bp+40.8%
tRNA-GlyTransfer RNA9,4119,48070 bp+–
ND3Protein-coding gene9,4819,827347 bp+36.3%
tRNA-ArgTransfer RNA9,8289,89467 bp+–
ND4LProtein-coding gene9,89610,192297 bp+32.3%
ND4Protein-coding gene10,18611,5631,378 bp+34.6%
tRNA-HisTransfer RNA11,56411,63269 bp+–
tRNA-Ser (AGY)Transfer RNA11,63411,69158 bp+–
tRNA-Leu (CUN)Transfer RNA11,69311,76270 bp+–
ND5Protein-coding gene11,76313,5801,818 bp+35.6%
ND6Protein-coding gene13,56414,088525 bp−34.7%
tRNA-GluTransfer RNA14,08914,15769 bp−–
CYTBProtein-coding gene14,16215,3011,140 bp+39.8%
tRNA-ThrTransfer RNA15,30215,36867 bp+–
tRNA-ProTransfer RNA15,37415,44269 bp−–
D-loopControl region15,44316,4581,016 bp–37.0%

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