Istiophorus platypterus

Atlantic sailfish

Maximum lifespan

13 yr

AnAge record

mtDNA size

16,524 bp

RefSeq NC_012676.1

GC content

46.87%

Whole genome

Non-coding

907 bp

D-loop 842 bp

Where Atlantic sailfish sits among 2,335 species

Whole-genome GC content against maximum lifespan. Atlantic sailfish has the 1,344th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,524 bp

GC skew (G − C) / (G + C): −0.302
AT skew (A − T) / (A + T): +0.030

Life history

Maximum lifespan: 13 years
Adult weight: 55.1 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04193)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

A match to a lifespan source is under review and was not used.

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,524 bp

Protein-coding11,409 bp

12S rRNA947 bp

16S rRNA1,712 bp

All tRNA1,551 bp

D-loop842 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Istiophorus platypterus genes

ND1NADH dehydrogenase subunit 1	975 bp	24.5%	28.2%	13.6%	33.6%	47.28%	−0.423	−0.070
ND2NADH dehydrogenase subunit 2	1,047 bp	26.3%	26.0%	12.2%	35.5%	47.76%	−0.488	+0.005
COX1Cytochrome c oxidase subunit I	1,551 bp	24.0%	29.0%	18.2%	28.8%	47.00%	−0.226	−0.095
COX2Cytochrome c oxidase subunit II	691 bp	29.2%	28.4%	15.3%	27.1%	42.40%	−0.276	+0.015
ATP8ATP synthase F0 subunit 8	168 bp	30.4%	25.6%	9.5%	34.5%	44.05%	−0.568	+0.085
ATP6ATP synthase F0 subunit 6	684 bp	25.6%	27.9%	12.1%	34.4%	46.49%	−0.478	−0.044
COX3Cytochrome c oxidase subunit III	786 bp	23.0%	26.8%	17.6%	32.6%	50.13%	−0.299	−0.077
ND3NADH dehydrogenase subunit 3	349 bp	21.5%	30.1%	13.5%	35.0%	48.42%	−0.444	−0.167
ND4LNADH dehydrogenase subunit 4L	297 bp	20.2%	27.9%	16.5%	35.4%	51.85%	−0.364	−0.161
ND4NADH dehydrogenase subunit 4	1,381 bp	25.1%	26.1%	14.5%	34.3%	48.73%	−0.406	−0.020
ND5NADH dehydrogenase subunit 5	1,839 bp	27.5%	26.4%	13.4%	32.7%	46.17%	−0.418	+0.020
ND6NADH dehydrogenase subunit 6	522 bp	38.1%	14.9%	13.2%	33.7%	46.94%	−0.437	+0.437
CYTBCytochrome b	1,141 bp	22.8%	27.7%	15.7%	33.8%	49.52%	−0.366	−0.097
12S rRNA12S ribosomal RNA	947 bp	30.5%	20.9%	22.3%	26.3%	48.57%	−0.083	+0.187
16S rRNA16S ribosomal RNA	1,712 bp	32.3%	21.1%	20.6%	26.0%	46.55%	−0.117	+0.209
D-loopControl region (D-loop)	842 bp	31.8%	29.3%	16.3%	22.6%	38.84%	−0.162	+0.041

Codon usage

Counts per codon, darker is more frequent

Gene

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU78

UUC157

Leu L17.5%

UUA77

UUG16

CUU160

CUC187

CUA184

CUG44

Ile I7.1%

AUU139

AUC131

Met M3.9%

AUA61

AUG88

Val V5.7%

GUU58

GUC76

GUA60

GUG24

Ser S6.6%

UCU48

UCC81

UCA58

UCG10

AGU11

AGC42

Pro P5.9%

CCU68

CCC99

CCA52

CCG6

Thr T8.0%

ACU43

ACC141

ACA108

ACG11

Ala A8.8%

GCU71

GCC164

GCA97

GCG5

Tyr Y2.9%

UAU42

UAC68

His H2.9%

CAU24

CAC85

Gln Q2.4%

CAA83

CAG10

Asn N3.1%

AAU32

AAC86

Lys K2.0%

AAA71

AAG4

Asp D2.0%

GAU21

GAC55

Glu E2.6%

GAA83

GAG16

Cys C0.6%

UGU3

UGC20

Trp W3.2%

UGA101

UGG20

Arg R2.0%

CGU11

CGC12

CGA50

CGG5

Gly G6.4%

GGU46

GGC94

GGA69

GGG34

Stop 0.2%

UAA9

UAG0

AGA0

AGG0

Genome map

38 annotated features in NC_012676.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (46.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Istiophorus platypterus (NC_012676.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,015	947 bp	+	48.6%
tRNA-Val	Transfer RNA	1,016	1,087	72 bp	+	–
16S rRNA	Ribosomal RNA	1,088	2,799	1,712 bp	+	46.6%
tRNA-Leu (UUR)	Transfer RNA	2,800	2,873	74 bp	+	–
ND1	Protein-coding gene	2,874	3,848	975 bp	+	47.3%
tRNA-Ile	Transfer RNA	3,853	3,922	70 bp	+	–
tRNA-Gln	Transfer RNA	3,922	3,992	71 bp	−	–
tRNA-Met	Transfer RNA	3,992	4,060	69 bp	+	–
ND2	Protein-coding gene	4,061	5,107	1,047 bp	+	47.8%
tRNA-Trp	Transfer RNA	5,107	5,177	71 bp	+	–
tRNA-Ala	Transfer RNA	5,179	5,247	69 bp	−	–
tRNA-Asn	Transfer RNA	5,249	5,321	73 bp	−	–
tRNA-Cys	Transfer RNA	5,361	5,427	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,428	5,497	70 bp	−	–
COX1	Protein-coding gene	5,499	7,049	1,551 bp	+	47.0%
tRNA-Ser (UCN)	Transfer RNA	7,050	7,120	71 bp	−	–
tRNA-Asp	Transfer RNA	7,124	7,194	71 bp	+	–
COX2	Protein-coding gene	7,202	7,892	691 bp	+	42.4%
tRNA-Lys	Transfer RNA	7,893	7,965	73 bp	+	–
ATP8	Protein-coding gene	7,967	8,134	168 bp	+	44.1%
ATP6	Protein-coding gene	8,125	8,808	684 bp	+	46.5%
COX3	Protein-coding gene	8,808	9,593	786 bp	+	50.1%
tRNA-Gly	Transfer RNA	9,593	9,664	72 bp	+	–
ND3	Protein-coding gene	9,665	10,013	349 bp	+	48.4%
tRNA-Arg	Transfer RNA	10,014	10,082	69 bp	+	–
ND4L	Protein-coding gene	10,083	10,379	297 bp	+	51.9%
ND4	Protein-coding gene	10,373	11,753	1,381 bp	+	48.7%
tRNA-His	Transfer RNA	11,754	11,822	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,823	11,891	69 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,896	11,968	73 bp	+	–
ND5	Protein-coding gene	11,969	13,807	1,839 bp	+	46.2%
ND6	Protein-coding gene	13,804	14,325	522 bp	−	46.9%
tRNA-Glu	Transfer RNA	14,326	14,395	70 bp	−	–
CYTB	Protein-coding gene	14,400	15,540	1,141 bp	+	49.5%
tRNA-Thr	Transfer RNA	15,541	15,612	72 bp	+	–
tRNA-Pro	Transfer RNA	15,612	15,682	71 bp	−	–
D-loop	Control region	15,683	16,524	842 bp	–	38.8%