MitoAge

Jaculus jaculus

Lesser Egyptian jerboa

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Maximum lifespan
7.3 yr
AnAge record
mtDNA size
16,546 bp
RefSeq NC_005314.1
GC content
41.04%
Whole genome
Non-coding
1,166 bp
D-loop 1,091 bp

Where Lesser Egyptian jerboa sits among 2,335 species

Whole-genome GC content against maximum lifespan. Lesser Egyptian jerboa has the 1,802nd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Lesser Egyptian jerboa
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,546 bp
GC skew (G − C) / (G + C)
−0.330
AT skew (A − T) / (A + T)
+0.034

Life history

Maximum lifespan
7.3 years
Adult weight
55 g
Birth weight
2 g
Basal metabolic rate
0.515 W
Body temperature
37.5 °C
Female sexual maturity
327 days
Male sexual maturity
137 days
Gestation or incubation
38 days
Litter or clutch size
3
Litters per year
1.5

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02956)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,546 bp
Protein-coding11,337 bp
12S rRNA968 bp
16S rRNA1,576 bp
All tRNA1,502 bp
D-loop1,091 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp28.1%31.1%11.7%29.1%40.84%−0.426−0.051
ND2NADH dehydrogenase subunit 21,042 bp29.7%30.0%8.8%31.5%40.31%−0.562−0.006
COX1Cytochrome c oxidase subunit I1,545 bp26.9%29.7%16.4%26.9%43.37%−0.242−0.049
COX2Cytochrome c oxidase subunit II684 bp31.7%27.6%13.6%27.0%40.64%−0.331+0.069
ATP8ATP synthase F0 subunit 8207 bp29.5%34.3%7.2%29.0%36.23%−0.600−0.076
ATP6ATP synthase F0 subunit 6681 bp27.5%30.4%12.3%29.8%42.14%−0.415−0.051
COX3Cytochrome c oxidase subunit III784 bp26.0%29.8%14.4%29.7%44.13%−0.347−0.068
ND3NADH dehydrogenase subunit 3348 bp28.2%32.5%12.9%26.4%39.37%−0.343−0.071
ND4LNADH dehydrogenase subunit 4L297 bp25.9%32.0%10.4%31.6%42.09%−0.504−0.105
ND4NADH dehydrogenase subunit 41,378 bp30.8%29.6%10.4%29.2%39.55%−0.475+0.020
ND5NADH dehydrogenase subunit 51,809 bp29.0%29.2%11.7%30.1%41.74%−0.441−0.004
ND6NADH dehydrogenase subunit 6525 bp40.6%19.4%8.2%31.8%40.00%−0.590+0.352
CYTBCytochrome b1,140 bp28.6%29.6%13.1%28.8%41.84%−0.375−0.017
12S rRNA12S ribosomal RNA968 bp33.3%24.9%18.9%22.9%41.84%−0.096+0.144
16S rRNA16S ribosomal RNA1,576 bp35.3%25.6%18.7%20.4%39.09%−0.045+0.160
D-loopControl region (D-loop)1,091 bp30.0%26.5%14.8%28.8%43.54%−0.322+0.062

Codon usage

Counts per codon, darker is more frequent

3,797 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU108
UUC133
Leu L16.2%
UUA75
UUG18
CUU129
CUC124
CUA237
CUG33
Ile I9.0%
AUU183
AUC158
Met M5.7%
AUA182
AUG33
Val V4.8%
GUU49
GUC55
GUA61
GUG17
Ser S8.4%
UCU84
UCC79
UCA94
UCG10
AGU18
AGC35
Pro P5.3%
CCU52
CCC65
CCA77
CCG6
Thr T7.6%
ACU82
ACC91
ACA102
ACG15
Ala A6.6%
GCU61
GCC107
GCA74
GCG8
Tyr Y3.3%
UAU56
UAC71
His H2.7%
CAU36
CAC65
Gln Q1.9%
CAA65
CAG9
Asn N4.0%
AAU53
AAC100
Lys K2.4%
AAA82
AAG11
Asp D2.1%
GAU31
GAC47
Glu E2.4%
GAA74
GAG16
Cys C0.7%
UGU9
UGC17
Trp W2.8%
UGA93
UGG15
Arg R1.8%
CGU14
CGC13
CGA40
CGG1
Gly G5.7%
GGU31
GGC73
GGA82
GGG29
Stop 0.2%
UAA6
UAG2
AGA1
AGG0

Genome map

38 annotated features in NC_005314.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (41.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16565 bp+–
12S rRNARibosomal RNA661,033968 bp+41.8%
tRNA-ValTransfer RNA1,0341,10168 bp+–
16S rRNARibosomal RNA1,1022,6771,576 bp+39.1%
tRNA-Leu (UUR)Transfer RNA2,6782,75275 bp+–
ND1Protein-coding gene2,7563,710955 bp+40.8%
tRNA-IleTransfer RNA3,7113,77969 bp+–
tRNA-GlnTransfer RNA3,7773,84973 bp−–
tRNA-MetTransfer RNA3,8503,91869 bp+–
ND2Protein-coding gene3,9194,9601,042 bp+40.3%
tRNA-TrpTransfer RNA4,9615,02767 bp+–
tRNA-AlaTransfer RNA5,0315,09969 bp−–
tRNA-AsnTransfer RNA5,1025,17473 bp−–
tRNA-CysTransfer RNA5,2095,27668 bp−–
tRNA-TyrTransfer RNA5,2815,34868 bp−–
COX1Protein-coding gene5,3506,8941,545 bp+43.4%
tRNA-Ser (UCN)Transfer RNA6,8926,96170 bp−–
tRNA-AspTransfer RNA6,9667,03267 bp+–
COX2Protein-coding gene7,0347,717684 bp+40.6%
tRNA-LysTransfer RNA7,7237,78765 bp+–
ATP8Protein-coding gene7,7897,995207 bp+36.2%
ATP6Protein-coding gene7,9508,630681 bp+42.1%
COX3Protein-coding gene8,6309,413784 bp+44.1%
tRNA-GlyTransfer RNA9,4149,48370 bp+–
ND3Protein-coding gene9,4849,831348 bp+39.4%
tRNA-ArgTransfer RNA9,8349,90269 bp+–
ND4LProtein-coding gene9,90410,200297 bp+42.1%
ND4Protein-coding gene10,19411,5711,378 bp+39.6%
tRNA-HisTransfer RNA11,57211,64069 bp+–
tRNA-Ser (AGY)Transfer RNA11,64111,69858 bp+–
tRNA-Leu (CUN)Transfer RNA11,69911,76870 bp+–
ND5Protein-coding gene11,76913,5771,809 bp+41.7%
ND6Protein-coding gene13,57414,098525 bp−40.0%
tRNA-GluTransfer RNA14,09914,16668 bp−–
CYTBProtein-coding gene14,17015,3091,140 bp+41.8%
tRNA-ThrTransfer RNA15,31515,38268 bp+–
tRNA-ProTransfer RNA15,38915,45567 bp−–
D-loopControl region15,45616,5461,091 bp–43.5%

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