Jaydia lineata
Indian perch
GC content
46.07%
Whole genome
Non-coding
924 bp
D-loop 847 bp
Where Indian perch sits among 2,335 species
Whole-genome GC content against maximum lifespan. Indian perch has the 2,038th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,506 bp
- GC skew (G − C) / (G + C)
- −0.236
- AT skew (A − T) / (A + T)
- +0.008
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,506 bp
Protein-coding11,401 bp
12S rRNA955 bp
16S rRNA1,679 bp
All tRNA1,547 bp
D-loop847 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.21% | −0.272 | −0.145 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 48.81% | −0.393 | −0.015 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 45.57% | −0.199 | −0.101 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.14% | −0.220 | +0.021 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.83% | −0.455 | +0.055 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.13% | −0.390 | −0.069 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.62% | −0.213 | −0.064 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.00% | −0.357 | −0.202 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.302 | −0.189 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.13% | −0.284 | −0.065 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.33% | −0.326 | −0.007 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.17% | −0.328 | +0.359 | |||||
| CYTBCytochrome b | 1,141 bp | 47.33% | −0.333 | −0.125 | |||||
| 12S rRNA12S ribosomal RNA | 955 bp | 48.48% | −0.102 | +0.240 | |||||
| 16S rRNA16S ribosomal RNA | 1,679 bp | 45.50% | −0.076 | +0.209 | |||||
| D-loopControl region (D-loop) | 847 bp | 38.14% | −0.053 | −0.027 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU123
UUC112
Leu L16.9%
UUA72
UUG30
CUU197
CUC112
CUA172
CUG62
Ile I7.2%
AUU170
AUC104
Met M4.0%
AUA80
AUG71
Val V6.0%
GUU78
GUC51
GUA82
GUG16
Ser S6.3%
UCU47
UCC71
UCA53
UCG20
AGU13
AGC37
Pro P5.9%
CCU42
CCC107
CCA62
CCG13
Thr T7.6%
ACU58
ACC105
ACA101
ACG26
Ala A9.4%
GCU66
GCC157
GCA118
GCG17
Tyr Y3.0%
UAU44
UAC70
His H2.8%
CAU29
CAC77
Gln Q2.4%
CAA70
CAG23
Asn N3.2%
AAU31
AAC91
Lys K2.0%
AAA53
AAG23
Asp D1.9%
GAU24
GAC49
Glu E2.6%
GAA69
GAG29
Cys C0.8%
UGU12
UGC20
Trp W3.0%
UGA94
UGG20
Arg R2.0%
CGU5
CGC15
CGA44
CGG14
Gly G6.5%
GGU33
GGC89
GGA71
GGG54
Stop 0.2%
UAA6
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_041647.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,023 | 955 bp | + | 48.5% |
| tRNA-Val | Transfer RNA | 1,024 | 1,095 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,096 | 2,774 | 1,679 bp | + | 45.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,775 | 2,848 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,849 | 3,823 | 975 bp | + | 48.2% |
| tRNA-Ile | Transfer RNA | 3,826 | 3,896 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,896 | 3,966 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,966 | 4,035 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,036 | 5,082 | 1,047 bp | + | 48.8% |
| tRNA-Trp | Transfer RNA | 5,084 | 5,155 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,161 | 5,229 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,231 | 5,303 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,343 | 5,408 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,478 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,486 | 7,030 | 1,545 bp | + | 45.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,103 | 7,174 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,181 | 7,871 | 691 bp | + | 44.1% |
| tRNA-Lys | Transfer RNA | 7,872 | 7,945 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,947 | 8,114 | 168 bp | + | 45.8% |
| ATP6 | Protein-coding gene | 8,105 | 8,788 | 684 bp | + | 43.1% |
| COX3 | Protein-coding gene | 8,788 | 9,572 | 785 bp | + | 46.6% |
| tRNA-Gly | Transfer RNA | 9,573 | 9,642 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,643 | 9,991 | 349 bp | + | 49.0% |
| tRNA-Arg | Transfer RNA | 9,992 | 10,060 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,061 | 10,357 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,351 | 11,731 | 1,381 bp | + | 46.1% |
| tRNA-His | Transfer RNA | 11,732 | 11,800 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,801 | 11,868 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,877 | 11,944 | 68 bp | + | – |
| ND5 | Protein-coding gene | 11,945 | 13,783 | 1,839 bp | + | 46.3% |
| ND6 | Protein-coding gene | 13,779 | 14,300 | 522 bp | − | 46.2% |
| tRNA-Glu | Transfer RNA | 14,301 | 14,369 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,376 | 15,516 | 1,141 bp | + | 47.3% |
| tRNA-Thr | Transfer RNA | 15,517 | 15,588 | 72 bp | − | – |
| tRNA-Pro | Transfer RNA | 15,589 | 15,659 | 71 bp | + | – |
| D-loop | Control region | 15,660 | 16,506 | 847 bp | – | 38.1% |