Kinosternon leucostomum
White-lipped mud turtle
GC content
35.81%
Whole genome
Non-coding
1,103 bp
D-loop 1,006 bp
Where White-lipped mud turtle sits among 2,335 species
Whole-genome GC content against maximum lifespan. White-lipped mud turtle has the 968th longest lifespan of them.
- This species
- Other reptiles
- Other classes
Base composition
Whole genome16,559 bp
- GC skew (G − C) / (G + C)
- −0.328
- AT skew (A − T) / (A + T)
- +0.121
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Updated in build 2
- In the database since
- build 1 (2015-07-01)
- Last changed
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,559 bp
Protein-coding11,357 bp
12S rRNA960 bp
16S rRNA1,597 bp
All tRNA1,542 bp
D-loop1,006 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 968 bp | 36.88% | −0.434 | +0.061 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,039 bp | 33.78% | −0.464 | +0.160 | |||||
| COX1Cytochrome c oxidase subunit I | 1,549 bp | 37.96% | −0.184 | −0.026 | |||||
| COX2Cytochrome c oxidase subunit II | 681 bp | 34.66% | −0.297 | +0.110 | |||||
| ATP8ATP synthase F0 subunit 8 | 180 bp | 31.67% | −0.509 | +0.089 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 35.53% | −0.498 | +0.093 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 39.16% | −0.283 | +0.044 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 35.04% | −0.431 | +0.079 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 35.02% | −0.500 | +0.078 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,368 bp | 35.02% | −0.453 | +0.136 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,809 bp | 34.55% | −0.430 | +0.125 | |||||
| ND6NADH dehydrogenase subunit 6 | 525 bp | 29.91% | −0.656 | +0.413 | |||||
| CYTBCytochrome b | 1,141 bp | 37.69% | −0.400 | +0.066 | |||||
| 12S rRNA12S ribosomal RNA | 960 bp | 38.65% | −0.137 | +0.222 | |||||
| 16S rRNA16S ribosomal RNA | 1,597 bp | 35.32% | −0.117 | +0.247 | |||||
| D-loopControl region (D-loop) | 1,006 bp | 33.40% | −0.345 | +0.015 |
Codon usage
Counts per codon, darker is more frequent3,790 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU112
UUC113
Leu L15.9%
UUA186
UUG18
CUU68
CUC39
CUA283
CUG8
Ile I8.3%
AUU187
AUC126
Met M7.4%
AUA256
AUG23
Val V4.0%
GUU34
GUC14
GUA96
GUG9
Ser S6.9%
UCU45
UCC42
UCA128
UCG1
AGU22
AGC22
Pro P5.1%
CCU25
CCC35
CCA129
CCG4
Thr T9.4%
ACU96
ACC90
ACA167
ACG2
Ala A6.3%
GCU65
GCC84
GCA85
GCG3
Tyr Y3.3%
UAU63
UAC61
His H3.0%
CAU52
CAC62
Gln Q2.7%
CAA98
CAG4
Asn N3.8%
AAU70
AAC74
Lys K3.1%
AAA110
AAG6
Asp D1.7%
GAU26
GAC37
Glu E2.3%
GAA78
GAG10
Cys C0.9%
UGU21
UGC13
Trp W2.9%
UGA99
UGG10
Arg R1.6%
CGU9
CGC7
CGA44
CGG2
Gly G5.5%
GGU48
GGC36
GGA103
GGG22
Stop 0.2%
UAA6
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_014577.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (35.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,029 | 960 bp | + | 38.7% |
| tRNA-Val | Transfer RNA | 1,030 | 1,100 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,101 | 2,697 | 1,597 bp | + | 35.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,698 | 2,771 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,772 | 3,739 | 968 bp | + | 36.9% |
| tRNA-Ile | Transfer RNA | 3,740 | 3,809 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,809 | 3,879 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,879 | 3,947 | 69 bp | + | – |
| ND2 | Protein-coding gene | 3,949 | 4,987 | 1,039 bp | + | 33.8% |
| tRNA-Trp | Transfer RNA | 4,988 | 5,056 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,058 | 5,126 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,128 | 5,200 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,227 | 5,292 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,303 | 5,372 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,374 | 6,922 | 1,549 bp | + | 38.0% |
| tRNA-Ser (UCN) | Transfer RNA | 6,954 | 7,024 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,027 | 7,094 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,095 | 7,775 | 681 bp | + | 34.7% |
| tRNA-Lys | Transfer RNA | 7,777 | 7,849 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,851 | 8,030 | 180 bp | + | 31.7% |
| ATP6 | Protein-coding gene | 8,021 | 8,704 | 684 bp | + | 35.5% |
| COX3 | Protein-coding gene | 8,704 | 9,487 | 784 bp | + | 39.2% |
| tRNA-Gly | Transfer RNA | 9,488 | 9,556 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,557 | 9,907 | 351 bp | + | 35.0% |
| tRNA-Arg | Transfer RNA | 9,911 | 9,980 | 70 bp | + | – |
| ND4L | Protein-coding gene | 9,981 | 10,277 | 297 bp | + | 35.0% |
| ND4 | Protein-coding gene | 10,274 | 11,641 | 1,368 bp | + | 35.0% |
| tRNA-His | Transfer RNA | 11,653 | 11,722 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,723 | 11,789 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,789 | 11,860 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,862 | 13,670 | 1,809 bp | + | 34.6% |
| ND6 | Protein-coding gene | 13,667 | 14,191 | 525 bp | − | 29.9% |
| tRNA-Glu | Transfer RNA | 14,192 | 14,261 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,269 | 15,409 | 1,141 bp | + | 37.7% |
| tRNA-Thr | Transfer RNA | 15,410 | 15,483 | 74 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,484 | 15,553 | 70 bp | − | – |
| D-loop | Control region | 15,554 | 16,559 | 1,006 bp | – | 33.4% |