Konosirus punctatus
Dotted gizzard shad
GC content
48.80%
Whole genome
Non-coding
1,107 bp
D-loop 1,037 bp
Where Dotted gizzard shad sits among 2,335 species
Whole-genome GC content against maximum lifespan. Dotted gizzard shad has the 2,044th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,698 bp
- GC skew (G − C) / (G + C)
- −0.182
- AT skew (A − T) / (A + T)
- +0.016
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,698 bp
Protein-coding11,408 bp
12S rRNA952 bp
16S rRNA1,682 bp
All tRNA1,554 bp
D-loop1,037 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.87% | −0.198 | −0.136 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 53.20% | −0.325 | −0.029 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.58% | −0.117 | −0.114 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 47.18% | −0.202 | +0.030 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 46.43% | −0.308 | +0.044 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 46.93% | −0.296 | −0.069 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 50.00% | −0.232 | −0.064 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 50.14% | −0.193 | −0.200 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.84% | −0.285 | −0.041 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.10% | −0.183 | −0.064 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 48.31% | −0.245 | −0.037 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 50.00% | −0.257 | +0.433 | |||||
| CYTBCytochrome b | 1,141 bp | 48.64% | −0.214 | −0.099 | |||||
| 12S rRNA12S ribosomal RNA | 952 bp | 51.16% | −0.101 | +0.204 | |||||
| 16S rRNA16S ribosomal RNA | 1,682 bp | 49.17% | −0.052 | +0.242 | |||||
| D-loopControl region (D-loop) | 1,037 bp | 40.89% | −0.175 | +0.060 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU87
UUC143
Leu L16.4%
UUA76
UUG41
CUU118
CUC130
CUA153
CUG107
Ile I7.0%
AUU140
AUC125
Met M4.1%
AUA48
AUG108
Val V6.4%
GUU52
GUC68
GUA72
GUG53
Ser S6.2%
UCU50
UCC56
UCA47
UCG29
AGU11
AGC42
Pro P5.7%
CCU59
CCC69
CCA58
CCG30
Thr T8.0%
ACU70
ACC119
ACA86
ACG31
Ala A9.8%
GCU77
GCC155
GCA97
GCG44
Tyr Y3.0%
UAU44
UAC70
His H2.8%
CAU26
CAC79
Gln Q2.5%
CAA66
CAG28
Asn N2.8%
AAU37
AAC70
Lys K2.0%
AAA40
AAG37
Asp D2.0%
GAU21
GAC57
Glu E2.7%
GAA56
GAG47
Cys C0.7%
UGU6
UGC21
Trp W3.1%
UGA78
UGG40
Arg R2.1%
CGU6
CGC13
CGA38
CGG22
Gly G6.5%
GGU30
GGC68
GGA84
GGG64
Stop 0.3%
UAA6
UAG4
AGA0
AGG0
Genome map
38 annotated features in NC_016694.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,021 | 952 bp | + | 51.2% |
| tRNA-Val | Transfer RNA | 1,022 | 1,093 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,094 | 2,775 | 1,682 bp | + | 49.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,776 | 2,851 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,852 | 3,826 | 975 bp | + | 50.9% |
| tRNA-Ile | Transfer RNA | 3,835 | 3,906 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,906 | 3,976 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,091 | 1,047 bp | + | 53.2% |
| tRNA-Trp | Transfer RNA | 5,090 | 5,161 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,163 | 5,231 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,232 | 5,305 | 74 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,339 | 5,404 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,478 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,480 | 7,030 | 1,551 bp | + | 47.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,031 | 7,101 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,174 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,187 | 7,877 | 691 bp | + | 47.2% |
| tRNA-Lys | Transfer RNA | 7,878 | 7,951 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,120 | 168 bp | + | 46.4% |
| ATP6 | Protein-coding gene | 8,111 | 8,794 | 684 bp | + | 46.9% |
| COX3 | Protein-coding gene | 8,794 | 9,579 | 786 bp | + | 50.0% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 10,001 | 351 bp | + | 50.1% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,069 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,070 | 10,366 | 297 bp | + | 50.8% |
| ND4 | Protein-coding gene | 10,360 | 11,740 | 1,381 bp | + | 49.1% |
| tRNA-His | Transfer RNA | 11,741 | 11,810 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,811 | 11,877 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,878 | 11,949 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,950 | 13,785 | 1,836 bp | + | 48.3% |
| ND6 | Protein-coding gene | 13,782 | 14,303 | 522 bp | − | 50.0% |
| tRNA-Glu | Transfer RNA | 14,305 | 14,373 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,380 | 15,520 | 1,141 bp | + | 48.6% |
| tRNA-Thr | Transfer RNA | 15,521 | 15,592 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,592 | 15,661 | 70 bp | − | – |
| D-loop | Control region | 15,662 | 16,698 | 1,037 bp | – | 40.9% |