Labeo rohita
Rohu
GC content
43.17%
Whole genome
Non-coding
1,023 bp
Including the D-loop
Where Rohu sits among 2,335 species
Whole-genome GC content against maximum lifespan. Rohu has the 1,554th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,626 bp
- GC skew (G − C) / (G + C)
- −0.288
- AT skew (A − T) / (A + T)
- +0.144
Life history
- Maximum lifespan
- 10 years
- Adult weight
- 24.8 kg
- Female sexual maturity
- 2.9 years
- Male sexual maturity
- 2.7 years
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03903)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,626 bp
Protein-coding11,391 bp
12S rRNA957 bp
16S rRNA1,689 bp
All tRNA1,566 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.23% | −0.379 | +0.116 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 44.93% | −0.489 | +0.271 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 43.13% | −0.205 | −0.020 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.71% | −0.291 | +0.131 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 36.97% | −0.443 | +0.154 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.40% | −0.400 | +0.066 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 45.42% | −0.300 | +0.068 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.13% | −0.364 | +0.046 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.47% | −0.217 | −0.031 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,378 bp | 42.02% | −0.354 | +0.114 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,824 bp | 41.72% | −0.427 | +0.180 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.64% | −0.468 | +0.564 | |||||
| CYTBCytochrome b | 1,141 bp | 42.59% | −0.379 | +0.069 | |||||
| 12S rRNA12S ribosomal RNA | 957 bp | 48.69% | −0.103 | +0.251 | |||||
| 16S rRNA16S ribosomal RNA | 1,689 bp | 43.52% | −0.094 | +0.306 |
Codon usage
Counts per codon, darker is more frequent3,801 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU63
UUC161
Leu L16.3%
UUA91
UUG27
CUU80
CUC86
CUA312
CUG24
Ile I8.0%
AUU142
AUC161
Met M4.4%
AUA133
AUG36
Val V5.7%
GUU46
GUC44
GUA107
GUG18
Ser S6.1%
UCU30
UCC51
UCA98
UCG5
AGU10
AGC39
Pro P5.6%
CCU26
CCC51
CCA130
CCG6
Thr T8.3%
ACU45
ACC111
ACA151
ACG7
Ala A8.7%
GCU49
GCC136
GCA141
GCG5
Tyr Y3.0%
UAU50
UAC64
His H2.7%
CAU20
CAC84
Gln Q2.6%
CAA99
CAG1
Asn N3.2%
AAU25
AAC96
Lys K2.1%
AAA76
AAG3
Asp D2.0%
GAU15
GAC60
Glu E2.7%
GAA92
GAG12
Cys C0.7%
UGU10
UGC15
Trp W3.2%
UGA116
UGG5
Arg R2.0%
CGU15
CGC12
CGA46
CGG3
Gly G6.6%
GGU33
GGC44
GGA139
GGG36
Stop 0.2%
UAA7
UAG1
AGA0
AGG0
Genome map
37 annotated features in NC_017608.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 954 | 1,022 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 1,023 | 1,979 | 957 bp | + | 48.7% |
| tRNA-Val | Transfer RNA | 1,980 | 2,051 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 2,052 | 3,740 | 1,689 bp | + | 43.5% |
| tRNA-Leu (UUR) | Transfer RNA | 3,741 | 3,818 | 78 bp | + | – |
| ND1 | Protein-coding gene | 3,819 | 4,793 | 975 bp | + | 45.2% |
| tRNA-Ile | Transfer RNA | 4,797 | 4,870 | 74 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,869 | 4,938 | 70 bp | − | – |
| tRNA-Met | Transfer RNA | 4,941 | 5,009 | 69 bp | + | – |
| ND2 | Protein-coding gene | 5,010 | 6,055 | 1,046 bp | + | 44.9% |
| tRNA-Trp | Transfer RNA | 6,056 | 6,126 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 6,129 | 6,197 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 6,200 | 6,272 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 6,305 | 6,375 | 71 bp | − | – |
| tRNA-Tyr | Transfer RNA | 6,374 | 6,444 | 71 bp | + | – |
| COX1 | Protein-coding gene | 6,446 | 7,996 | 1,551 bp | + | 43.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,997 | 8,067 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 8,071 | 8,142 | 72 bp | + | – |
| COX2 | Protein-coding gene | 8,158 | 8,848 | 691 bp | + | 43.7% |
| tRNA-Lys | Transfer RNA | 8,849 | 8,924 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 8,926 | 9,090 | 165 bp | + | 37.0% |
| ATP6 | Protein-coding gene | 9,084 | 9,767 | 684 bp | + | 42.4% |
| COX3 | Protein-coding gene | 9,768 | 10,553 | 786 bp | + | 45.4% |
| tRNA-Gly | Transfer RNA | 10,554 | 10,625 | 72 bp | + | – |
| ND3 | Protein-coding gene | 10,626 | 10,974 | 349 bp | + | 44.1% |
| tRNA-Arg | Transfer RNA | 10,975 | 11,044 | 70 bp | + | – |
| ND4L | Protein-coding gene | 11,045 | 11,341 | 297 bp | + | 46.5% |
| ND4 | Protein-coding gene | 11,335 | 12,712 | 1,378 bp | + | 42.0% |
| tRNA-His | Transfer RNA | 12,713 | 12,781 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,782 | 12,850 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,851 | 12,924 | 74 bp | + | – |
| ND5 | Protein-coding gene | 12,928 | 14,751 | 1,824 bp | + | 41.7% |
| ND6 | Protein-coding gene | 14,748 | 15,269 | 522 bp | − | 44.6% |
| tRNA-Glu | Transfer RNA | 15,270 | 15,338 | 69 bp | + | – |
| CYTB | Protein-coding gene | 15,344 | 16,484 | 1,141 bp | + | 42.6% |
| tRNA-Thr | Transfer RNA | 16,485 | 16,556 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 16,556 | 16,625 | 70 bp | − | – |