MitoAge

Lagopus muta

Rock ptarmigan

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Maximum lifespan
11.7 yr
AnAge record
mtDNA size
16,683 bp
RefSeq NC_034002.1
GC content
43.94%
Whole genome
Non-coding
1,199 bp
D-loop 1,144 bp

Where Rock ptarmigan sits among 2,335 species

Whole-genome GC content against maximum lifespan. Rock ptarmigan has the 1,461st longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Rock ptarmigan
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,683 bp
GC skew (G − C) / (G + C)
−0.393
AT skew (A − T) / (A + T)
+0.078

Life history

Maximum lifespan
11.7 years
Adult weight
535.5 g
Female sexual maturity
363 days

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 00688)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,683 bp
Protein-coding11,373 bp
12S rRNA967 bp
16S rRNA1,610 bp
All tRNA1,544 bp
D-loop1,144 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp26.7%28.2%11.9%33.2%45.13%−0.473−0.028
ND2NADH dehydrogenase subunit 21,039 bp31.2%27.0%9.0%32.8%41.77%−0.571+0.071
COX1Cytochrome c oxidase subunit I1,551 bp27.1%27.7%16.1%29.1%45.26%−0.288−0.011
COX2Cytochrome c oxidase subunit II684 bp30.4%25.4%13.2%31.0%44.15%−0.404+0.089
ATP8ATP synthase F0 subunit 8165 bp35.2%23.6%4.8%36.4%41.21%−0.765+0.196
ATP6ATP synthase F0 subunit 6684 bp27.3%27.3%10.5%34.8%45.32%−0.5350.000
COX3Cytochrome c oxidase subunit III784 bp27.0%27.2%14.8%31.0%45.79%−0.354−0.002
ND3NADH dehydrogenase subunit 3351 bp27.1%28.2%12.0%32.8%44.73%−0.465−0.021
ND4LNADH dehydrogenase subunit 4L297 bp26.3%28.3%12.1%33.3%45.46%−0.467−0.037
ND4NADH dehydrogenase subunit 41,378 bp31.4%27.3%9.1%32.1%41.29%−0.557+0.070
ND5NADH dehydrogenase subunit 51,818 bp31.0%24.5%10.7%33.8%44.50%−0.520+0.116
ND6NADH dehydrogenase subunit 6522 bp42.9%11.9%8.4%36.8%45.21%−0.627+0.566
CYTBCytochrome b1,143 bp27.6%26.2%12.2%34.0%46.28%−0.471+0.026
12S rRNA12S ribosomal RNA967 bp33.1%21.2%18.5%27.2%45.71%−0.190+0.219
16S rRNA16S ribosomal RNA1,610 bp33.5%22.4%18.1%26.0%44.10%−0.177+0.200
D-loopControl region (D-loop)1,144 bp25.3%33.8%14.6%26.2%40.82%−0.285−0.143

Codon usage

Counts per codon, darker is more frequent

3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU85
UUC142
Leu L17.7%
UUA100
UUG21
CUU112
CUC182
CUA229
CUG26
Ile I8.1%
AUU112
AUC197
Met M4.3%
AUA134
AUG31
Val V4.2%
GUU32
GUC46
GUA57
GUG25
Ser S7.7%
UCU42
UCC87
UCA105
UCG9
AGU14
AGC36
Pro P6.1%
CCU48
CCC78
CCA99
CCG7
Thr T9.2%
ACU73
ACC147
ACA126
ACG2
Ala A7.3%
GCU58
GCC122
GCA92
GCG4
Tyr Y2.7%
UAU42
UAC62
His H2.9%
CAU31
CAC80
Gln Q2.5%
CAA87
CAG7
Asn N3.5%
AAU34
AAC97
Lys K2.4%
AAA86
AAG4
Asp D1.7%
GAU26
GAC37
Glu E2.4%
GAA85
GAG7
Cys C0.7%
UGU12
UGC15
Trp W2.8%
UGA96
UGG12
Arg R1.8%
CGU11
CGC12
CGA42
CGG5
Gly G5.7%
GGU22
GGC80
GGA81
GGG33
Stop 0.3%
UAA8
UAG0
AGA0
AGG2

Genome map

38 annotated features in NC_034002.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (43.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
D-loopControl region11,1441,144 bp–40.8%
tRNA-PheTransfer RNA1,1451,21167 bp+–
12S rRNARibosomal RNA1,2122,178967 bp+45.7%
tRNA-ValTransfer RNA2,1792,25173 bp+–
16S rRNARibosomal RNA2,2523,8611,610 bp+44.1%
tRNA-Leu (UUR)Transfer RNA3,8613,93474 bp+–
ND1Protein-coding gene3,9484,922975 bp+45.1%
tRNA-IleTransfer RNA4,9234,99674 bp+–
tRNA-GlnTransfer RNA5,0035,07371 bp−–
tRNA-MetTransfer RNA5,0735,14169 bp+–
ND2Protein-coding gene5,1426,1801,039 bp+41.8%
tRNA-TrpTransfer RNA6,1816,25676 bp+–
tRNA-AlaTransfer RNA6,2596,32769 bp−–
tRNA-AsnTransfer RNA6,3316,40474 bp−–
tRNA-CysTransfer RNA6,4076,47266 bp−–
tRNA-TyrTransfer RNA6,4726,54271 bp−–
COX1Protein-coding gene6,5448,0941,551 bp+45.3%
tRNA-Ser (UCN)Transfer RNA8,0868,16075 bp−–
tRNA-AspTransfer RNA8,1638,23169 bp+–
COX2Protein-coding gene8,2338,916684 bp+44.2%
tRNA-LysTransfer RNA8,9188,98770 bp+–
ATP8Protein-coding gene8,9899,153165 bp+41.2%
ATP6Protein-coding gene9,1449,827684 bp+45.3%
COX3Protein-coding gene9,82710,610784 bp+45.8%
tRNA-GlyTransfer RNA10,61110,67969 bp+–
ND3Protein-coding gene10,68011,031352 bp+44.7%
tRNA-ArgTransfer RNA11,03311,10169 bp+–
ND4LProtein-coding gene11,10211,398297 bp+45.5%
ND4Protein-coding gene11,39212,7691,378 bp+41.3%
tRNA-HisTransfer RNA12,77012,83869 bp+–
tRNA-Ser (AGY)Transfer RNA12,84012,90465 bp+–
tRNA-Leu (CUN)Transfer RNA12,90612,97671 bp+–
ND5Protein-coding gene12,97714,7941,818 bp+44.5%
CYTBProtein-coding gene14,80415,9461,143 bp+46.3%
tRNA-ThrTransfer RNA15,94916,01769 bp+–
tRNA-ProTransfer RNA16,02016,08869 bp−–
ND6Protein-coding gene16,09416,615522 bp−45.2%
tRNA-GluTransfer RNA16,61716,68367 bp−–

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