Larimichthys crocea
Large yellow croaker
GC content
46.99%
Whole genome
Non-coding
868 bp
D-loop 795 bp
Where Large yellow croaker sits among 2,335 species
Whole-genome GC content against maximum lifespan. Large yellow croaker has the 1,933rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,466 bp
- GC skew (G − C) / (G + C)
- −0.306
- AT skew (A − T) / (A + T)
- +0.039
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,466 bp
Protein-coding11,409 bp
12S rRNA947 bp
16S rRNA1,693 bp
All tRNA1,554 bp
D-loop795 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.41% | −0.381 | −0.054 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.47% | −0.523 | +0.013 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 47.91% | −0.177 | −0.107 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.59% | −0.289 | +0.027 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 43.45% | −0.507 | +0.116 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.95% | −0.427 | −0.067 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.54% | −0.318 | −0.069 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.58% | −0.378 | −0.207 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.84% | −0.430 | −0.014 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.81% | −0.386 | −0.016 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.68% | −0.436 | +0.017 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.490 | +0.462 | |||||
| CYTBCytochrome b | 1,137 bp | 48.37% | −0.364 | −0.101 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 47.52% | −0.093 | +0.211 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 45.95% | −0.152 | +0.237 | |||||
| D-loopControl region (D-loop) | 795 bp | 38.74% | −0.188 | +0.043 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU88
UUC142
Leu L18.0%
UUA91
UUG20
CUU127
CUC216
CUA171
CUG59
Ile I7.1%
AUU143
AUC127
Met M4.1%
AUA90
AUG68
Val V5.2%
GUU62
GUC63
GUA45
GUG27
Ser S5.9%
UCU34
UCC74
UCA58
UCG9
AGU6
AGC44
Pro P5.9%
CCU61
CCC111
CCA43
CCG9
Thr T8.2%
ACU51
ACC138
ACA118
ACG7
Ala A9.0%
GCU68
GCC168
GCA91
GCG15
Tyr Y2.8%
UAU51
UAC57
His H2.9%
CAU31
CAC81
Gln Q2.5%
CAA82
CAG13
Asn N3.2%
AAU45
AAC75
Lys K1.8%
AAA60
AAG10
Asp D2.0%
GAU22
GAC53
Glu E2.7%
GAA73
GAG31
Cys C0.7%
UGU6
UGC21
Trp W3.1%
UGA100
UGG19
Arg R2.0%
CGU10
CGC17
CGA43
CGG8
Gly G6.5%
GGU35
GGC110
GGA58
GGG45
Stop 0.2%
UAA6
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_011710.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,016 | 947 bp | + | 47.5% |
| tRNA-Val | Transfer RNA | 1,017 | 1,087 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,780 | 1,693 bp | + | 46.0% |
| tRNA-Leu (UUR) | Transfer RNA | 2,781 | 2,854 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,855 | 3,829 | 975 bp | + | 48.4% |
| tRNA-Ile | Transfer RNA | 3,834 | 3,905 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,905 | 3,977 | 73 bp | − | – |
| tRNA-Met | Transfer RNA | 3,977 | 4,047 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,048 | 5,093 | 1,046 bp | + | 48.5% |
| tRNA-Trp | Transfer RNA | 5,094 | 5,164 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,166 | 5,234 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,237 | 5,309 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,347 | 5,413 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,414 | 5,483 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,485 | 7,041 | 1,557 bp | + | 47.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,037 | 7,108 | 72 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,112 | 7,180 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,189 | 7,879 | 691 bp | + | 45.6% |
| tRNA-Lys | Transfer RNA | 7,880 | 7,954 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,956 | 8,123 | 168 bp | + | 43.5% |
| ATP6 | Protein-coding gene | 8,114 | 8,797 | 684 bp | + | 48.0% |
| COX3 | Protein-coding gene | 8,797 | 9,581 | 785 bp | + | 48.5% |
| tRNA-Gly | Transfer RNA | 9,582 | 9,652 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,653 | 10,001 | 349 bp | + | 51.6% |
| tRNA-Arg | Transfer RNA | 10,002 | 10,070 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,071 | 10,367 | 297 bp | + | 50.8% |
| ND4 | Protein-coding gene | 10,361 | 11,741 | 1,381 bp | + | 48.8% |
| tRNA-His | Transfer RNA | 11,742 | 11,810 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,811 | 11,877 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,884 | 11,956 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,957 | 13,795 | 1,839 bp | + | 45.7% |
| ND6 | Protein-coding gene | 13,792 | 14,313 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,314 | 14,382 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,387 | 15,523 | 1,137 bp | + | 48.4% |
| tRNA-Thr | Transfer RNA | 15,528 | 15,599 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,602 | 15,671 | 70 bp | − | – |
| D-loop | Control region | 15,672 | 16,466 | 795 bp | – | 38.7% |