MitoAge

Lepidophyma flavimaculatum

Yellow-spotted night lizard

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Maximum lifespan
11 yr
AnAge record
mtDNA size
16,158 bp
RefSeq NC_008775.1
GC content
44.98%
Whole genome
Non-coding
848 bp
D-loop 821 bp

Where Yellow-spotted night lizard sits among 2,335 species

Whole-genome GC content against maximum lifespan. Yellow-spotted night lizard has the 1,499th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Yellow-spotted night lizard
  • This species
  • Other reptiles
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,158 bp
GC skew (G − C) / (G + C)
−0.339
AT skew (A − T) / (A + T)
+0.099

Life history

Maximum lifespan
11 years
Adult weight
11.3 g

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03665)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, tiny sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,158 bp
Protein-coding11,347 bp
12S rRNA939 bp
16S rRNA1,513 bp
All tRNA1,521 bp
D-loop821 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1966 bp27.2%28.5%13.8%30.5%44.31%−0.379−0.022
ND2NADH dehydrogenase subunit 21,033 bp28.8%22.0%13.3%36.0%49.27%−0.462+0.134
COX1Cytochrome c oxidase subunit I1,551 bp26.4%28.4%16.9%28.3%45.20%−0.253−0.038
COX2Cytochrome c oxidase subunit II687 bp32.5%24.2%14.4%29.0%43.38%−0.336+0.147
ATP8ATP synthase F0 subunit 8168 bp32.7%25.6%10.1%31.5%41.67%−0.514+0.122
ATP6ATP synthase F0 subunit 6680 bp29.0%25.9%11.0%34.1%45.15%−0.511+0.056
COX3Cytochrome c oxidase subunit III784 bp26.4%25.6%17.7%30.2%47.96%−0.261+0.015
ND3NADH dehydrogenase subunit 3343 bp25.7%30.9%13.4%30.0%43.44%−0.383−0.093
ND4LNADH dehydrogenase subunit 4L297 bp32.7%23.2%11.4%32.7%44.11%−0.481+0.169
ND4NADH dehydrogenase subunit 41,371 bp30.5%26.8%11.0%31.7%42.74%−0.485+0.065
ND5NADH dehydrogenase subunit 51,821 bp31.0%24.5%13.1%31.4%44.48%−0.410+0.116
ND6NADH dehydrogenase subunit 6525 bp42.9%11.2%12.4%33.5%45.91%−0.461+0.585
CYTBCytochrome b1,143 bp25.7%27.5%12.4%34.4%46.81%−0.469−0.033
12S rRNA12S ribosomal RNA939 bp31.6%18.3%21.8%28.2%50.05%−0.128+0.267
16S rRNA16S ribosomal RNA1,513 bp35.5%20.8%19.0%24.7%43.69%−0.129+0.261
D-loopControl region (D-loop)821 bp29.8%34.3%11.8%24.0%35.81%−0.340−0.070

Codon usage

Counts per codon, darker is more frequent

3,788 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.5%
UUU103
UUC106
Leu L17.0%
UUA87
UUG34
CUU105
CUC169
CUA203
CUG47
Ile I7.7%
AUU140
AUC151
Met M5.5%
AUA164
AUG43
Val V4.6%
GUU44
GUC60
GUA48
GUG21
Ser S6.9%
UCU36
UCC66
UCA86
UCG16
AGU13
AGC44
Pro P5.7%
CCU33
CCC76
CCA99
CCG8
Thr T9.5%
ACU50
ACC158
ACA140
ACG13
Ala A7.9%
GCU36
GCC164
GCA87
GCG14
Tyr Y3.0%
UAU61
UAC54
His H2.8%
CAU22
CAC85
Gln Q2.6%
CAA81
CAG18
Asn N3.4%
AAU38
AAC92
Lys K2.4%
AAA78
AAG13
Asp D1.9%
GAU17
GAC54
Glu E2.2%
GAA50
GAG35
Cys C0.7%
UGU10
UGC17
Trp W2.8%
UGA86
UGG20
Arg R1.8%
CGU7
CGC15
CGA39
CGG9
Gly G5.6%
GGU24
GGC82
GGA73
GGG35
Stop 0.2%
UAA4
UAG3
AGA1
AGG1

Genome map

38 annotated features in NC_008775.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16464 bp+–
12S rRNARibosomal RNA651,003939 bp+50.1%
tRNA-ValTransfer RNA1,0041,06764 bp+–
16S rRNARibosomal RNA1,0682,5801,513 bp+43.7%
tRNA-Leu (UUR)Transfer RNA2,5812,65575 bp+–
ND1Protein-coding gene2,6563,621966 bp+44.3%
tRNA-IleTransfer RNA3,6303,70172 bp+–
tRNA-GlnTransfer RNA3,7013,77272 bp−–
tRNA-MetTransfer RNA3,7723,83968 bp+–
ND2Protein-coding gene3,8404,8721,033 bp+49.3%
tRNA-TrpTransfer RNA4,8734,94169 bp+–
tRNA-AlaTransfer RNA4,9415,00868 bp−–
tRNA-AsnTransfer RNA5,0105,08273 bp−–
tRNA-CysTransfer RNA5,0855,14965 bp−–
tRNA-TyrTransfer RNA5,1505,22273 bp−–
COX1Protein-coding gene5,2246,7741,551 bp+45.2%
tRNA-Ser (UCN)Transfer RNA6,7656,83571 bp−–
tRNA-AspTransfer RNA6,8406,90566 bp+–
COX2Protein-coding gene6,9077,593687 bp+43.4%
tRNA-LysTransfer RNA7,5957,66571 bp+–
ATP8Protein-coding gene7,6677,834168 bp+41.7%
ATP6Protein-coding gene7,8258,504680 bp+45.2%
COX3Protein-coding gene8,5059,288784 bp+48.0%
tRNA-GlyTransfer RNA9,2899,35769 bp+–
ND3Protein-coding gene9,3599,701343 bp+43.4%
tRNA-ArgTransfer RNA9,7029,77170 bp+–
ND4LProtein-coding gene9,77210,068297 bp+44.1%
ND4Protein-coding gene10,06211,4321,371 bp+42.7%
tRNA-HisTransfer RNA11,43511,50470 bp+–
tRNA-Ser (AGY)Transfer RNA11,50511,56965 bp+–
tRNA-Leu (CUN)Transfer RNA11,57011,64071 bp+–
ND5Protein-coding gene11,64113,4611,821 bp+44.5%
ND6Protein-coding gene13,45713,981525 bp−45.9%
tRNA-GluTransfer RNA13,98214,05271 bp−–
CYTBProtein-coding gene14,05715,1991,143 bp+46.8%
tRNA-ThrTransfer RNA15,20115,27070 bp+–
tRNA-ProTransfer RNA15,27015,33768 bp−–
D-loopControl region15,33816,158821 bp–35.8%

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