Lepisosteus platyrhincus
Florida gar
GC content
42.43%
Whole genome
Non-coding
743 bp
D-loop 572 bp
Where Florida gar sits among 2,335 species
Whole-genome GC content against maximum lifespan. Florida gar has the 989th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,320 bp
- GC skew (G − C) / (G + C)
- −0.281
- AT skew (A − T) / (A + T)
- +0.076
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,320 bp
Protein-coding11,474 bp
12S rRNA955 bp
16S rRNA1,600 bp
All tRNA1,553 bp
D-loop572 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 41.44% | −0.366 | +0.019 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 38.47% | −0.488 | +0.154 | |||||
| COX1Cytochrome c oxidase subunit I | 1,557 bp | 43.22% | −0.201 | −0.048 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.97% | −0.269 | +0.057 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.05% | −0.622 | +0.106 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.69% | −0.438 | −0.031 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.48% | −0.305 | +0.009 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 43.84% | −0.386 | −0.061 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 43.43% | −0.333 | −0.024 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.43% | −0.358 | +0.034 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,905 bp | 40.58% | −0.413 | +0.062 | |||||
| ND6NADH dehydrogenase subunit 6 | 519 bp | 43.93% | −0.518 | +0.464 | |||||
| CYTBCytochrome b | 1,141 bp | 41.54% | −0.346 | −0.022 | |||||
| 12S rRNA12S ribosomal RNA | 955 bp | 47.44% | −0.095 | +0.227 | |||||
| 16S rRNA16S ribosomal RNA | 1,600 bp | 43.06% | −0.100 | +0.221 | |||||
| D-loopControl region (D-loop) | 572 bp | 36.54% | +0.024 | −0.080 |
Codon usage
Counts per codon, darker is more frequent3,830 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU129
UUC104
Leu L16.8%
UUA120
UUG26
CUU116
CUC110
CUA235
CUG35
Ile I7.9%
AUU198
AUC103
Met M4.9%
AUA149
AUG39
Val V5.2%
GUU54
GUC43
GUA87
GUG14
Ser S6.3%
UCU38
UCC67
UCA77
UCG7
AGU19
AGC33
Pro P5.9%
CCU34
CCC76
CCA109
CCG7
Thr T8.4%
ACU50
ACC134
ACA132
ACG7
Ala A8.0%
GCU61
GCC130
GCA102
GCG14
Tyr Y3.2%
UAU64
UAC57
His H2.6%
CAU31
CAC67
Gln Q2.6%
CAA93
CAG8
Asn N3.2%
AAU40
AAC83
Lys K2.2%
AAA75
AAG8
Asp D2.0%
GAU22
GAC54
Glu E2.7%
GAA91
GAG13
Cys C0.8%
UGU12
UGC17
Trp W3.2%
UGA113
UGG9
Arg R2.0%
CGU7
CGC9
CGA55
CGG5
Gly G6.0%
GGU31
GGC47
GGA115
GGG38
Stop 0.2%
UAA5
UAG0
AGA1
AGG1
Genome map
38 annotated features in NC_029715.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (42.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,023 | 955 bp | + | 47.4% |
| tRNA-Val | Transfer RNA | 1,028 | 1,098 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,137 | 2,736 | 1,600 bp | + | 43.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,788 | 2,862 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,863 | 3,837 | 975 bp | + | 41.4% |
| tRNA-Ile | Transfer RNA | 3,845 | 3,916 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,915 | 3,985 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,985 | 4,053 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,054 | 5,098 | 1,045 bp | + | 38.5% |
| tRNA-Trp | Transfer RNA | 5,099 | 5,169 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,171 | 5,239 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,241 | 5,313 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,352 | 5,417 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,417 | 5,487 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,489 | 7,045 | 1,557 bp | + | 43.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,041 | 7,111 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,116 | 7,187 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,200 | 7,890 | 691 bp | + | 42.0% |
| tRNA-Lys | Transfer RNA | 7,891 | 7,962 | 72 bp | + | – |
| ATP8 | Protein-coding gene | 7,964 | 8,131 | 168 bp | + | 44.1% |
| ATP6 | Protein-coding gene | 8,122 | 8,805 | 684 bp | + | 42.7% |
| COX3 | Protein-coding gene | 8,805 | 9,589 | 785 bp | + | 45.5% |
| tRNA-Gly | Transfer RNA | 9,590 | 9,661 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,662 | 10,010 | 349 bp | + | 43.8% |
| tRNA-Arg | Transfer RNA | 10,011 | 10,080 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,081 | 10,377 | 297 bp | + | 43.4% |
| ND4 | Protein-coding gene | 10,371 | 11,751 | 1,381 bp | + | 42.4% |
| tRNA-His | Transfer RNA | 11,752 | 11,820 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,821 | 11,891 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,892 | 11,963 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,964 | 13,868 | 1,905 bp | + | 40.6% |
| ND6 | Protein-coding gene | 13,864 | 14,382 | 519 bp | − | 43.9% |
| tRNA-Glu | Transfer RNA | 14,383 | 14,451 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,455 | 15,595 | 1,141 bp | + | 41.5% |
| tRNA-Thr | Transfer RNA | 15,596 | 15,668 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,679 | 15,748 | 70 bp | − | – |
| D-loop | Control region | 15,749 | 16,320 | 572 bp | – | 36.5% |