Lepomis cyanellus
Green sunfish
GC content
46.32%
Whole genome
Non-coding
894 bp
Including the D-loop
Where Green sunfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Green sunfish has the 1,650th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,485 bp
- GC skew (G − C) / (G + C)
- −0.292
- AT skew (A − T) / (A + T)
- +0.023
Life history
- Maximum lifespan
- 9 years
- Adult weight
- 529 g
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04121)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,485 bp
Protein-coding11,407 bp
12S rRNA948 bp
16S rRNA1,688 bp
All tRNA1,548 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.05% | −0.359 | −0.053 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 45.79% | −0.486 | +0.002 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.81% | −0.223 | −0.108 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.30% | −0.291 | +0.037 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.553 | +0.087 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.37% | −0.432 | −0.083 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.24% | −0.295 | −0.038 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.57% | −0.399 | −0.068 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.15% | −0.413 | −0.065 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.86% | −0.395 | −0.069 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.02% | −0.408 | +0.001 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.04% | −0.445 | +0.429 | |||||
| CYTBCytochrome b | 1,141 bp | 47.68% | −0.371 | −0.095 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 46.94% | −0.070 | +0.185 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 46.86% | −0.082 | +0.197 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU108
UUC125
Leu L17.7%
UUA102
UUG21
CUU157
CUC166
CUA189
CUG37
Ile I7.1%
AUU141
AUC129
Met M3.9%
AUA96
AUG54
Val V5.5%
GUU63
GUC64
GUA59
GUG25
Ser S6.2%
UCU45
UCC78
UCA55
UCG7
AGU11
AGC39
Pro P5.9%
CCU62
CCC117
CCA41
CCG6
Thr T8.1%
ACU49
ACC138
ACA109
ACG11
Ala A9.2%
GCU73
GCC153
GCA108
GCG16
Tyr Y2.9%
UAU41
UAC70
His H2.8%
CAU30
CAC78
Gln Q2.5%
CAA84
CAG10
Asn N3.2%
AAU28
AAC94
Lys K1.9%
AAA61
AAG12
Asp D1.9%
GAU19
GAC54
Glu E2.7%
GAA80
GAG22
Cys C0.7%
UGU11
UGC15
Trp W3.2%
UGA100
UGG21
Arg R2.0%
CGU10
CGC17
CGA39
CGG10
Gly G6.3%
GGU42
GGC85
GGA64
GGG49
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
37 annotated features in NC_020359.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 46.9% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,776 | 1,688 bp | + | 46.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,777 | 2,850 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,851 | 3,825 | 975 bp | + | 46.1% |
| tRNA-Ile | Transfer RNA | 3,830 | 3,899 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,899 | 3,969 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,969 | 4,037 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,038 | 5,083 | 1,046 bp | + | 45.8% |
| tRNA-Trp | Transfer RNA | 5,084 | 5,154 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,157 | 5,225 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,227 | 5,299 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,337 | 5,402 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,402 | 5,471 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,473 | 7,023 | 1,551 bp | + | 46.8% |
| tRNA-Ser (UCN) | Transfer RNA | 7,024 | 7,094 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,169 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,178 | 7,868 | 691 bp | + | 45.3% |
| tRNA-Lys | Transfer RNA | 7,869 | 7,942 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,944 | 8,111 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,102 | 8,785 | 684 bp | + | 47.4% |
| COX3 | Protein-coding gene | 8,785 | 9,569 | 785 bp | + | 46.2% |
| tRNA-Gly | Transfer RNA | 9,570 | 9,641 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,642 | 9,990 | 349 bp | + | 49.6% |
| tRNA-Arg | Transfer RNA | 9,991 | 10,059 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,060 | 10,356 | 297 bp | + | 48.2% |
| ND4 | Protein-coding gene | 10,350 | 11,730 | 1,381 bp | + | 47.9% |
| tRNA-His | Transfer RNA | 11,731 | 11,799 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,800 | 11,867 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,872 | 11,944 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,945 | 13,783 | 1,839 bp | + | 45.0% |
| ND6 | Protein-coding gene | 13,780 | 14,301 | 522 bp | − | 49.0% |
| tRNA-Glu | Transfer RNA | 14,302 | 14,370 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,375 | 15,515 | 1,141 bp | + | 47.7% |
| tRNA-Thr | Transfer RNA | 15,516 | 15,587 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,587 | 15,656 | 70 bp | − | – |