Lepomis humilis
Orangespotted sunfish
GC content
46.50%
Whole genome
Non-coding
891 bp
D-loop 824 bp
Where Orangespotted sunfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Orangespotted sunfish has the 2,129th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,481 bp
- GC skew (G − C) / (G + C)
- −0.278
- AT skew (A − T) / (A + T)
- +0.030
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,481 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA1,688 bp
All tRNA1,548 bp
D-loop824 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.18% | −0.361 | −0.072 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.99% | −0.482 | +0.026 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.49% | −0.209 | −0.096 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.73% | −0.253 | +0.045 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.02% | −0.494 | +0.034 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.08% | −0.453 | −0.039 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.03% | −0.284 | −0.069 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.71% | −0.301 | −0.140 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.17% | −0.396 | −0.054 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.15% | −0.365 | −0.067 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.13% | −0.388 | +0.009 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.94% | −0.388 | +0.386 | |||||
| CYTBCytochrome b | 1,141 bp | 47.77% | −0.332 | −0.077 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 46.99% | −0.079 | +0.191 | |||||
| 16S rRNA16S ribosomal RNA | 1,688 bp | 46.15% | −0.083 | +0.215 | |||||
| D-loopControl region (D-loop) | 824 bp | 38.59% | −0.132 | +0.004 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU108
UUC125
Leu L17.5%
UUA97
UUG18
CUU156
CUC160
CUA181
CUG55
Ile I7.0%
AUU141
AUC126
Met M4.0%
AUA96
AUG58
Val V5.7%
GUU58
GUC55
GUA77
GUG26
Ser S6.2%
UCU38
UCC81
UCA56
UCG8
AGU15
AGC39
Pro P5.9%
CCU61
CCC107
CCA50
CCG7
Thr T8.2%
ACU55
ACC143
ACA107
ACG9
Ala A9.1%
GCU57
GCC166
GCA102
GCG21
Tyr Y2.8%
UAU41
UAC67
His H2.8%
CAU28
CAC80
Gln Q2.5%
CAA77
CAG20
Asn N3.1%
AAU39
AAC79
Lys K1.9%
AAA60
AAG13
Asp D2.0%
GAU20
GAC55
Glu E2.7%
GAA79
GAG23
Cys C0.7%
UGU5
UGC22
Trp W3.2%
UGA99
UGG22
Arg R1.9%
CGU4
CGC19
CGA41
CGG10
Gly G6.3%
GGU40
GGC84
GGA54
GGG60
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_084074.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 47.0% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,775 | 1,688 bp | + | 46.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,776 | 2,849 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,850 | 3,824 | 975 bp | + | 47.2% |
| tRNA-Ile | Transfer RNA | 3,829 | 3,898 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,898 | 3,968 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,968 | 4,036 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,037 | 5,082 | 1,046 bp | + | 48.0% |
| tRNA-Trp | Transfer RNA | 5,083 | 5,153 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,156 | 5,224 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,226 | 5,298 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,338 | 5,401 | 64 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,402 | 5,471 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,473 | 7,023 | 1,551 bp | + | 46.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,024 | 7,094 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,170 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,179 | 7,869 | 691 bp | + | 45.7% |
| tRNA-Lys | Transfer RNA | 7,870 | 7,943 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,945 | 8,112 | 168 bp | + | 47.0% |
| ATP6 | Protein-coding gene | 8,103 | 8,786 | 684 bp | + | 47.1% |
| COX3 | Protein-coding gene | 8,786 | 9,570 | 785 bp | + | 48.0% |
| tRNA-Gly | Transfer RNA | 9,571 | 9,642 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,643 | 9,991 | 349 bp | + | 46.7% |
| tRNA-Arg | Transfer RNA | 9,992 | 10,060 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,061 | 10,357 | 297 bp | + | 50.2% |
| ND4 | Protein-coding gene | 10,351 | 11,731 | 1,381 bp | + | 48.2% |
| tRNA-His | Transfer RNA | 11,732 | 11,800 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,801 | 11,868 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,873 | 11,945 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,946 | 13,784 | 1,839 bp | + | 45.1% |
| ND6 | Protein-coding gene | 13,781 | 14,302 | 522 bp | − | 46.9% |
| tRNA-Glu | Transfer RNA | 14,303 | 14,371 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,376 | 15,516 | 1,141 bp | + | 47.8% |
| tRNA-Thr | Transfer RNA | 15,517 | 15,588 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,588 | 15,657 | 70 bp | − | – |
| D-loop | Control region | 15,658 | 16,481 | 824 bp | – | 38.6% |