Lepomis macrochirus
Bluegill
GC content
46.92%
Whole genome
Non-coding
893 bp
Including the D-loop
Where Bluegill sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bluegill has the 1,557th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,489 bp
- GC skew (G − C) / (G + C)
- −0.288
- AT skew (A − T) / (A + T)
- +0.034
Life history
- Maximum lifespan
- 10 years
- Adult weight
- 1.2 kg
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04122)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,489 bp
Protein-coding11,407 bp
12S rRNA947 bp
16S rRNA1,692 bp
All tRNA1,550 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.77% | −0.364 | −0.075 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.95% | −0.492 | +0.007 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.52% | −0.208 | −0.115 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.01% | −0.280 | +0.042 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 46.43% | −0.513 | +0.067 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 48.83% | −0.461 | −0.046 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.26% | −0.283 | −0.048 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.14% | −0.381 | −0.072 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.18% | −0.421 | −0.048 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 49.60% | −0.378 | −0.043 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.33% | −0.392 | +0.007 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.79% | −0.439 | +0.399 | |||||
| CYTBCytochrome b | 1,141 bp | 48.38% | −0.348 | −0.066 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 47.20% | −0.078 | +0.184 | |||||
| 16S rRNA16S ribosomal RNA | 1,692 bp | 45.51% | −0.096 | +0.217 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU105
UUC127
Leu L17.6%
UUA93
UUG20
CUU140
CUC184
CUA178
CUG54
Ile I6.9%
AUU124
AUC138
Met M4.1%
AUA92
AUG64
Val V5.8%
GUU66
GUC63
GUA64
GUG27
Ser S6.3%
UCU40
UCC86
UCA52
UCG6
AGU12
AGC42
Pro P5.9%
CCU51
CCC119
CCA45
CCG10
Thr T8.2%
ACU52
ACC141
ACA105
ACG13
Ala A9.0%
GCU56
GCC167
GCA105
GCG16
Tyr Y2.9%
UAU42
UAC68
His H2.8%
CAU29
CAC78
Gln Q2.5%
CAA80
CAG17
Asn N3.1%
AAU39
AAC79
Lys K1.9%
AAA65
AAG9
Asp D2.0%
GAU24
GAC51
Glu E2.7%
GAA76
GAG25
Cys C0.7%
UGU5
UGC22
Trp W3.2%
UGA97
UGG24
Arg R1.9%
CGU5
CGC22
CGA42
CGG5
Gly G6.3%
GGU31
GGC96
GGA55
GGG57
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
37 annotated features in NC_015984.2Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,015 | 947 bp | + | 47.2% |
| tRNA-Val | Transfer RNA | 1,016 | 1,087 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,779 | 1,692 bp | + | 45.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,780 | 2,853 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,854 | 3,828 | 975 bp | + | 46.8% |
| tRNA-Ile | Transfer RNA | 3,833 | 3,902 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,902 | 3,972 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,972 | 4,040 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,041 | 5,086 | 1,046 bp | + | 49.0% |
| tRNA-Trp | Transfer RNA | 5,087 | 5,157 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,160 | 5,228 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,230 | 5,302 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,342 | 5,405 | 64 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,406 | 5,475 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,477 | 7,027 | 1,551 bp | + | 47.5% |
| tRNA-Ser (UCN) | Transfer RNA | 7,028 | 7,098 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,102 | 7,176 | 75 bp | + | – |
| COX2 | Protein-coding gene | 7,183 | 7,873 | 691 bp | + | 45.0% |
| tRNA-Lys | Transfer RNA | 7,874 | 7,947 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,949 | 8,116 | 168 bp | + | 46.4% |
| ATP6 | Protein-coding gene | 8,107 | 8,790 | 684 bp | + | 48.8% |
| COX3 | Protein-coding gene | 8,790 | 9,574 | 785 bp | + | 47.3% |
| tRNA-Gly | Transfer RNA | 9,575 | 9,646 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,647 | 9,995 | 349 bp | + | 48.1% |
| tRNA-Arg | Transfer RNA | 9,996 | 10,064 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,065 | 10,361 | 297 bp | + | 51.2% |
| ND4 | Protein-coding gene | 10,355 | 11,735 | 1,381 bp | + | 49.6% |
| tRNA-His | Transfer RNA | 11,736 | 11,804 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,805 | 11,872 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,877 | 11,949 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,950 | 13,788 | 1,839 bp | + | 46.3% |
| ND6 | Protein-coding gene | 13,785 | 14,306 | 522 bp | − | 45.8% |
| tRNA-Glu | Transfer RNA | 14,307 | 14,375 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,380 | 15,520 | 1,141 bp | + | 48.4% |
| tRNA-Thr | Transfer RNA | 15,521 | 15,592 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,592 | 15,661 | 70 bp | − | – |