Leptoclinus maculatus
Daubed shanny
GC content
45.30%
Whole genome
Non-coding
923 bp
D-loop 854 bp
Where Daubed shanny sits among 2,335 species
Whole-genome GC content against maximum lifespan. Daubed shanny has the 1,449th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,524 bp
- GC skew (G − C) / (G + C)
- −0.227
- AT skew (A − T) / (A + T)
- −0.011
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,524 bp
Protein-coding11,407 bp
12S rRNA948 bp
16S rRNA1,695 bp
All tRNA1,551 bp
D-loop854 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.59% | −0.276 | −0.151 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 47.13% | −0.396 | −0.002 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.58% | −0.171 | −0.123 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.56% | −0.243 | −0.010 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.447 | +0.065 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 41.81% | −0.385 | −0.126 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 48.15% | −0.270 | −0.061 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.42% | −0.259 | −0.187 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 46.80% | −0.324 | −0.152 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.68% | −0.264 | −0.105 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.48% | −0.318 | −0.066 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.94% | −0.371 | +0.401 | |||||
| CYTBCytochrome b | 1,141 bp | 44.61% | −0.277 | −0.136 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 48.31% | −0.083 | +0.159 | |||||
| 16S rRNA16S ribosomal RNA | 1,695 bp | 45.13% | −0.067 | +0.176 | |||||
| D-loopControl region (D-loop) | 854 bp | 37.00% | −0.082 | 0.000 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU139
UUC93
Leu L16.9%
UUA102
UUG25
CUU196
CUC116
CUA156
CUG49
Ile I6.9%
AUU175
AUC86
Met M4.2%
AUA89
AUG70
Val V6.3%
GUU91
GUC45
GUA80
GUG22
Ser S6.4%
UCU54
UCC68
UCA56
UCG11
AGU14
AGC39
Pro P5.8%
CCU64
CCC92
CCA46
CCG18
Thr T7.7%
ACU56
ACC126
ACA99
ACG11
Ala A9.2%
GCU78
GCC154
GCA105
GCG15
Tyr Y3.0%
UAU41
UAC72
His H2.8%
CAU41
CAC65
Gln Q2.7%
CAA77
CAG27
Asn N3.0%
AAU54
AAC62
Lys K1.9%
AAA59
AAG13
Asp D2.0%
GAU26
GAC52
Glu E2.5%
GAA61
GAG35
Cys C0.7%
UGU7
UGC19
Trp W3.2%
UGA92
UGG28
Arg R2.0%
CGU11
CGC14
CGA39
CGG12
Gly G6.6%
GGU45
GGC80
GGA74
GGG54
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_027588.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 48.3% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,783 | 1,695 bp | + | 45.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,857 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,858 | 3,832 | 975 bp | + | 47.6% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,906 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,906 | 3,976 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,090 | 1,046 bp | + | 47.1% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,161 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,163 | 5,231 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,233 | 5,305 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,343 | 5,408 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,409 | 5,479 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,481 | 7,031 | 1,551 bp | + | 45.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,177 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,190 | 7,880 | 691 bp | + | 43.6% |
| tRNA-Lys | Transfer RNA | 7,881 | 7,954 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,956 | 8,123 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,114 | 8,797 | 684 bp | + | 41.8% |
| COX3 | Protein-coding gene | 8,797 | 9,581 | 785 bp | + | 48.2% |
| tRNA-Gly | Transfer RNA | 9,582 | 9,653 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,654 | 10,002 | 349 bp | + | 46.4% |
| tRNA-Arg | Transfer RNA | 10,003 | 10,071 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,072 | 10,368 | 297 bp | + | 46.8% |
| ND4 | Protein-coding gene | 10,362 | 11,742 | 1,381 bp | + | 44.7% |
| tRNA-His | Transfer RNA | 11,743 | 11,811 | 69 bp | + | – |
| tRNA-Ser (UCN) | Transfer RNA | 11,812 | 11,879 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,884 | 11,956 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,957 | 13,795 | 1,839 bp | + | 44.5% |
| ND6 | Protein-coding gene | 13,792 | 14,313 | 522 bp | − | 46.9% |
| tRNA-Glu | Transfer RNA | 14,314 | 14,382 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,388 | 15,528 | 1,141 bp | + | 44.6% |
| tRNA-Thr | Transfer RNA | 15,529 | 15,601 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,601 | 15,670 | 70 bp | − | – |
| D-loop | Control region | 15,671 | 16,524 | 854 bp | – | 37.0% |