Lethenteron camtschaticum

Arctic lamprey

Maximum lifespan

7 yr

AnAge record

mtDNA size

16,277 bp

RefSeq NC_020465.1

GC content

37.83%

Whole genome

Non-coding

868 bp

D-loop 757 bp

Where Arctic lamprey sits among 2,335 species

Whole-genome GC content against maximum lifespan. Arctic lamprey has the 1,819th longest lifespan of them.

This species
All other species

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,277 bp

GC skew (G − C) / (G + C): −0.265
AT skew (A − T) / (A + T): +0.024

Life history

Maximum lifespan: 7 years
Female sexual maturity: 4.5 years
Male sexual maturity: 4.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01741)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,277 bp

Protein-coding11,372 bp

12S rRNA901 bp

16S rRNA1,617 bp

All tRNA1,529 bp

D-loop757 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Lethenteron camtschaticum genes

ND1NADH dehydrogenase subunit 1	966 bp	28.7%	34.1%	13.6%	23.7%	37.27%	−0.272	−0.086
ND2NADH dehydrogenase subunit 2	1,042 bp	33.1%	31.3%	11.1%	24.5%	35.61%	−0.375	+0.028
COX1Cytochrome c oxidase subunit I	1,554 bp	28.4%	32.9%	15.8%	23.0%	38.74%	−0.186	−0.074
COX2Cytochrome c oxidase subunit II	684 bp	31.6%	28.8%	15.2%	24.4%	39.62%	−0.232	+0.046
ATP8ATP synthase F0 subunit 8	168 bp	33.9%	29.2%	10.1%	26.8%	36.91%	−0.452	+0.075
ATP6ATP synthase F0 subunit 6	714 bp	30.7%	32.2%	10.6%	26.5%	37.12%	−0.426	−0.025
COX3Cytochrome c oxidase subunit III	786 bp	28.0%	29.8%	15.4%	26.8%	42.24%	−0.271	−0.031
ND3NADH dehydrogenase subunit 3	351 bp	25.9%	35.0%	12.3%	26.8%	39.03%	−0.372	−0.150
ND4LNADH dehydrogenase subunit 4L	291 bp	32.3%	29.2%	10.7%	27.8%	38.49%	−0.446	+0.050
ND4NADH dehydrogenase subunit 4	1,377 bp	31.2%	33.0%	10.3%	25.5%	35.80%	−0.424	−0.027
ND5NADH dehydrogenase subunit 5	1,797 bp	33.1%	30.2%	11.4%	25.3%	36.73%	−0.379	+0.047
ND6NADH dehydrogenase subunit 6	519 bp	46.1%	16.2%	10.8%	27.0%	37.77%	−0.429	+0.480
CYTBCytochrome b	1,191 bp	28.3%	33.8%	14.7%	23.3%	37.95%	−0.226	−0.088
12S rRNA12S ribosomal RNA	901 bp	32.9%	22.2%	19.1%	25.9%	44.95%	−0.151	+0.194
16S rRNA16S ribosomal RNA	1,617 bp	36.2%	25.5%	17.7%	20.6%	38.28%	−0.076	+0.174
D-loopControl region (D-loop)	757 bp	30.8%	39.4%	11.4%	18.5%	29.86%	−0.239	−0.122

Codon usage

Counts per codon, darker is more frequent

Gene

3,813 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU138

UUC103

Leu L16.0%

UUA184

UUG15

CUU124

CUC65

CUA206

CUG15

Ile I8.6%

AUU237

AUC92

Met M5.6%

AUA179

AUG35

Val V5.0%

GUU69

GUC33

GUA68

GUG19

Ser S6.9%

UCU64

UCC51

UCA84

UCG4

AGU23

AGC36

Pro P5.4%

CCU55

CCC32

CCA107

CCG10

Thr T8.0%

ACU102

ACC78

ACA116

ACG8

Ala A8.1%

GCU108

GCC98

GCA98

GCG4

Tyr Y2.9%

UAU73

UAC39

His H2.6%

CAU47

CAC54

Gln Q2.6%

CAA92

CAG6

Asn N3.8%

AAU87

AAC56

Lys K2.4%

AAA85

AAG8

Asp D1.8%

GAU35

GAC32

Glu E2.5%

GAA81

GAG15

Cys C1.0%

UGU20

UGC17

Trp W2.8%

UGA104

UGG3

Arg R2.0%

CGU19

CGC14

CGA39

CGG3

Gly G5.6%

GGU33

GGC60

GGA89

GGG30

Stop 0.3%

UAA4

UAG1

AGA6

AGG1

Genome map

39 annotated features in NC_020465.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop2

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (37.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 39 features as a table

Annotated features of Lethenteron camtschaticum (NC_020465.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	67	67 bp	+	–
12S rRNA	Ribosomal RNA	68	968	901 bp	+	45.0%
tRNA-Val	Transfer RNA	969	1,039	71 bp	+	–
16S rRNA	Ribosomal RNA	1,040	2,656	1,617 bp	+	38.3%
tRNA-Leu (UUR)	Transfer RNA	2,657	2,730	74 bp	+	–
ND1	Protein-coding gene	2,735	3,700	966 bp	+	37.3%
tRNA-Ile	Transfer RNA	3,730	3,798	69 bp	+	–
tRNA-Gln	Transfer RNA	3,801	3,871	71 bp	−	–
tRNA-Met	Transfer RNA	3,872	3,939	68 bp	+	–
ND2	Protein-coding gene	3,941	4,982	1,042 bp	+	35.6%
tRNA-Trp	Transfer RNA	4,983	5,050	68 bp	+	–
tRNA-Ala	Transfer RNA	5,053	5,120	68 bp	−	–
tRNA-Asn	Transfer RNA	5,125	5,193	69 bp	−	–
tRNA-Cys	Transfer RNA	5,196	5,261	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,267	5,337	71 bp	−	–
COX1	Protein-coding gene	5,339	6,892	1,554 bp	+	38.7%
tRNA-Ser (UCN)	Transfer RNA	6,883	6,954	72 bp	−	–
tRNA-Asp	Transfer RNA	6,955	7,023	69 bp	+	–
COX2	Protein-coding gene	7,027	7,710	684 bp	+	39.6%
tRNA-Lys	Transfer RNA	7,731	7,797	67 bp	+	–
ATP8	Protein-coding gene	7,799	7,966	168 bp	+	36.9%
ATP6	Protein-coding gene	7,957	8,670	714 bp	+	37.1%
COX3	Protein-coding gene	8,636	9,421	786 bp	+	42.2%
tRNA-Gly	Transfer RNA	9,430	9,498	69 bp	+	–
ND3	Protein-coding gene	9,500	9,850	351 bp	+	39.0%
tRNA-Arg	Transfer RNA	9,856	9,921	66 bp	+	–
ND4L	Protein-coding gene	9,929	10,219	291 bp	+	38.5%
ND4	Protein-coding gene	10,213	11,589	1,377 bp	+	35.8%
tRNA-His	Transfer RNA	11,591	11,659	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,659	11,728	70 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,729	11,800	72 bp	+	–
ND5	Protein-coding gene	11,802	13,598	1,797 bp	+	36.7%
ND6	Protein-coding gene	13,583	14,101	519 bp	−	37.8%
D-loop	Control region	14,102	14,619	518 bp	–	29.9%
tRNA-Thr	Transfer RNA	14,620	14,691	72 bp	+	–
tRNA-Glu	Transfer RNA	14,693	14,763	71 bp	−	–
D-loop	Control region	14,764	15,002	239 bp	–	29.9%
CYTB	Protein-coding gene	15,003	16,193	1,191 bp	+	38.0%
tRNA-Pro	Transfer RNA	16,197	16,267	71 bp	−	–