Lethrinus obsoletus
Orange-striped emperor
GC content
47.99%
Whole genome
Non-coding
1,142 bp
D-loop 970 bp
Where Orange-striped emperor sits among 2,335 species
Whole-genome GC content against maximum lifespan. Orange-striped emperor has the 1,283rd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,779 bp
- GC skew (G − C) / (G + C)
- −0.281
- AT skew (A − T) / (A + T)
- +0.029
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,779 bp
Protein-coding11,414 bp
12S rRNA955 bp
16S rRNA1,709 bp
All tRNA1,559 bp
D-loop970 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 972 bp | 50.21% | −0.332 | −0.091 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 50.77% | −0.465 | +0.045 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.55% | −0.198 | −0.128 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.01% | −0.260 | +0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 46.43% | −0.410 | +0.089 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 49.49% | −0.432 | −0.072 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.94% | −0.286 | −0.003 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.57% | −0.353 | −0.216 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 56.23% | −0.341 | −0.185 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.73% | −0.355 | −0.023 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 48.78% | −0.411 | +0.036 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.55% | −0.383 | +0.391 | |||||
| CYTBCytochrome b | 1,141 bp | 49.17% | −0.344 | −0.062 | |||||
| 12S rRNA12S ribosomal RNA | 955 bp | 49.32% | −0.113 | +0.153 | |||||
| 16S rRNA16S ribosomal RNA | 1,709 bp | 45.64% | −0.121 | +0.199 | |||||
| D-loopControl region (D-loop) | 970 bp | 40.10% | −0.157 | −0.009 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU84
UUC148
Leu L17.5%
UUA63
UUG23
CUU143
CUC195
CUA176
CUG65
Ile I6.9%
AUU111
AUC151
Met M4.0%
AUA73
AUG78
Val V5.9%
GUU60
GUC80
GUA50
GUG34
Ser S6.4%
UCU43
UCC83
UCA50
UCG13
AGU9
AGC44
Pro P5.9%
CCU58
CCC106
CCA49
CCG13
Thr T7.6%
ACU34
ACC130
ACA106
ACG21
Ala A9.5%
GCU69
GCC164
GCA109
GCG19
Tyr Y2.9%
UAU42
UAC69
His H2.7%
CAU21
CAC82
Gln Q2.7%
CAA84
CAG17
Asn N3.2%
AAU32
AAC88
Lys K2.0%
AAA61
AAG14
Asp D2.0%
GAU14
GAC62
Glu E2.5%
GAA65
GAG31
Cys C0.7%
UGU8
UGC18
Trp W3.1%
UGA94
UGG25
Arg R2.0%
CGU12
CGC17
CGA40
CGG8
Gly G6.3%
GGU24
GGC90
GGA78
GGG49
Stop 0.2%
UAA5
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_009855.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,023 | 955 bp | + | 49.3% |
| tRNA-Val | Transfer RNA | 1,024 | 1,097 | 74 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,194 | 2,902 | 1,709 bp | + | 45.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,903 | 2,976 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,977 | 3,948 | 972 bp | + | 50.2% |
| tRNA-Ile | Transfer RNA | 3,953 | 4,022 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,022 | 4,092 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,092 | 4,161 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,162 | 5,207 | 1,046 bp | + | 50.8% |
| tRNA-Trp | Transfer RNA | 5,208 | 5,280 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,281 | 5,349 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,351 | 5,423 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,461 | 5,529 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,529 | 5,599 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,601 | 7,151 | 1,551 bp | + | 48.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,153 | 7,223 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,227 | 7,298 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,306 | 7,996 | 691 bp | + | 45.0% |
| tRNA-Lys | Transfer RNA | 7,997 | 8,072 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 8,074 | 8,241 | 168 bp | + | 46.4% |
| ATP6 | Protein-coding gene | 8,255 | 8,937 | 683 bp | + | 49.5% |
| COX3 | Protein-coding gene | 8,938 | 9,722 | 785 bp | + | 49.9% |
| tRNA-Gly | Transfer RNA | 9,723 | 9,794 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,795 | 10,143 | 349 bp | + | 49.6% |
| tRNA-Arg | Transfer RNA | 10,144 | 10,211 | 68 bp | + | – |
| ND4L | Protein-coding gene | 10,213 | 10,509 | 297 bp | + | 56.2% |
| ND4 | Protein-coding gene | 10,503 | 11,883 | 1,381 bp | + | 48.7% |
| tRNA-His | Transfer RNA | 11,884 | 11,952 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,953 | 12,022 | 70 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,026 | 12,098 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,099 | 13,937 | 1,839 bp | + | 48.8% |
| ND6 | Protein-coding gene | 13,934 | 14,455 | 522 bp | − | 46.6% |
| tRNA-Glu | Transfer RNA | 14,456 | 14,524 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,529 | 15,669 | 1,141 bp | + | 49.2% |
| tRNA-Thr | Transfer RNA | 15,670 | 15,741 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,741 | 15,809 | 69 bp | − | – |
| D-loop | Control region | 15,810 | 16,779 | 970 bp | – | 40.1% |