Leuresthes tenuis
California grunion
GC content
45.34%
Whole genome
Non-coding
1,116 bp
D-loop 861 bp
Where California grunion sits among 2,335 species
Whole-genome GC content against maximum lifespan. California grunion has the 1,768th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,719 bp
- GC skew (G − C) / (G + C)
- −0.262
- AT skew (A − T) / (A + T)
- −0.022
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,719 bp
Protein-coding11,406 bp
12S rRNA944 bp
16S rRNA1,697 bp
All tRNA1,556 bp
D-loop861 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.90% | −0.323 | −0.157 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 47.27% | −0.445 | −0.082 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.58% | −0.191 | −0.145 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.71% | −0.238 | −0.059 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.437 | +0.031 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.57% | −0.416 | −0.104 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.50% | −0.271 | −0.110 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.28% | −0.321 | −0.185 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.20% | −0.405 | −0.165 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.04% | −0.347 | −0.104 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.54% | −0.365 | −0.071 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.55% | −0.374 | +0.391 | |||||
| CYTBCytochrome b | 1,141 bp | 46.45% | −0.309 | −0.149 | |||||
| 12S rRNA12S ribosomal RNA | 944 bp | 47.56% | −0.082 | +0.200 | |||||
| 16S rRNA16S ribosomal RNA | 1,697 bp | 45.26% | −0.068 | +0.193 | |||||
| D-loopControl region (D-loop) | 861 bp | 35.89% | −0.210 | −0.029 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.4%
UUU110
UUC135
Leu L16.9%
UUA77
UUG22
CUU207
CUC147
CUA146
CUG43
Ile I7.0%
AUU177
AUC89
Met M4.3%
AUA94
AUG70
Val V6.0%
GUU74
GUC61
GUA60
GUG33
Ser S6.6%
UCU45
UCC89
UCA58
UCG8
AGU15
AGC38
Pro P5.8%
CCU76
CCC90
CCA47
CCG9
Thr T7.5%
ACU62
ACC136
ACA80
ACG8
Ala A9.1%
GCU93
GCC156
GCA85
GCG14
Tyr Y3.1%
UAU56
UAC63
His H2.8%
CAU41
CAC64
Gln Q2.6%
CAA80
CAG19
Asn N2.9%
AAU48
AAC64
Lys K2.0%
AAA57
AAG19
Asp D2.0%
GAU32
GAC44
Glu E2.5%
GAA74
GAG22
Cys C0.7%
UGU8
UGC17
Trp W3.1%
UGA93
UGG26
Arg R1.9%
CGU11
CGC9
CGA43
CGG11
Gly G6.4%
GGU54
GGC88
GGA65
GGG38
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_044649.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,013 | 944 bp | + | 47.6% |
| tRNA-Val | Transfer RNA | 1,014 | 1,086 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,783 | 1,697 bp | + | 45.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,857 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,858 | 3,832 | 975 bp | + | 47.9% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,905 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,905 | 3,975 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,975 | 4,043 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,044 | 5,088 | 1,045 bp | + | 47.3% |
| tRNA-Trp | Transfer RNA | 5,089 | 5,160 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,162 | 5,230 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,232 | 5,304 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,344 | 5,410 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,411 | 5,480 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 45.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,052 | 7,122 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,126 | 7,197 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,205 | 7,895 | 691 bp | + | 43.7% |
| tRNA-Lys | Transfer RNA | 7,896 | 7,969 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,971 | 8,138 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 8,129 | 8,812 | 684 bp | + | 43.6% |
| COX3 | Protein-coding gene | 8,812 | 9,596 | 785 bp | + | 46.5% |
| tRNA-Gly | Transfer RNA | 9,597 | 9,667 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,668 | 10,016 | 349 bp | + | 47.3% |
| tRNA-Arg | Transfer RNA | 10,017 | 10,085 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,086 | 10,382 | 297 bp | + | 53.2% |
| ND4 | Protein-coding gene | 10,376 | 11,756 | 1,381 bp | + | 45.0% |
| tRNA-His | Transfer RNA | 11,757 | 11,825 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,826 | 11,897 | 72 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,898 | 11,970 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,971 | 13,809 | 1,839 bp | + | 44.5% |
| ND6 | Protein-coding gene | 13,806 | 14,327 | 522 bp | − | 46.6% |
| tRNA-Glu | Transfer RNA | 14,328 | 14,396 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,401 | 15,541 | 1,141 bp | + | 46.5% |
| tRNA-Thr | Transfer RNA | 15,542 | 15,613 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,615 | 15,684 | 70 bp | − | – |
| D-loop | Control region | 15,685 | 16,545 | 861 bp | – | 35.9% |