MitoAge

Lissemys punctata

Indian flapshell turtle

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Maximum lifespan
17.8 yr
AnAge record
mtDNA size
16,490 bp
RefSeq NC_012414.1
GC content
38.58%
Whole genome
Non-coding
1,083 bp
D-loop 1,008 bp

Where Indian flapshell turtle sits among 2,335 species

Whole-genome GC content against maximum lifespan. Indian flapshell turtle has the 1,064th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Indian flapshell turtle
  • This species
  • Other reptiles
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,490 bp
GC skew (G − C) / (G + C)
−0.367
AT skew (A − T) / (A + T)
+0.164

Life history

Maximum lifespan
17.8 years
Adult weight
1.4 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03789)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,490 bp
Protein-coding11,310 bp
12S rRNA976 bp
16S rRNA1,571 bp
All tRNA1,550 bp
D-loop1,008 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1969 bp33.3%28.6%10.4%27.7%38.08%−0.453+0.077
ND2NADH dehydrogenase subunit 21,036 bp39.5%25.1%8.5%26.9%35.43%−0.520+0.223
COX1Cytochrome c oxidase subunit I1,536 bp30.1%28.6%15.8%25.5%41.28%−0.233+0.027
COX2Cytochrome c oxidase subunit II687 bp36.2%25.6%12.4%25.8%38.14%−0.351+0.172
ATP8ATP synthase F0 subunit 8165 bp38.2%26.7%5.5%29.7%35.15%−0.690+0.178
ATP6ATP synthase F0 subunit 6684 bp36.8%27.0%8.5%27.6%36.11%−0.530+0.153
COX3Cytochrome c oxidase subunit III784 bp31.1%26.5%14.0%28.3%42.35%−0.337+0.080
ND3NADH dehydrogenase subunit 3349 bp34.1%25.8%10.0%30.1%40.12%−0.500+0.139
ND4LNADH dehydrogenase subunit 4L297 bp30.3%30.3%9.8%29.6%39.39%−0.5040.000
ND4NADH dehydrogenase subunit 41,381 bp36.1%25.7%8.9%29.3%38.16%−0.533+0.169
ND5NADH dehydrogenase subunit 51,779 bp36.1%24.4%10.2%29.3%39.52%−0.482+0.193
ND6NADH dehydrogenase subunit 6525 bp49.0%14.5%6.9%29.7%36.57%−0.625+0.544
CYTBCytochrome b1,140 bp33.2%27.2%11.1%28.6%39.65%−0.442+0.099
12S rRNA12S ribosomal RNA976 bp37.7%21.0%17.3%23.9%41.23%−0.159+0.284
16S rRNA16S ribosomal RNA1,571 bp38.8%22.5%16.7%22.0%38.64%−0.137+0.266
D-loopControl region (D-loop)1,008 bp34.9%31.7%11.8%21.5%33.33%−0.292+0.048

Codon usage

Counts per codon, darker is more frequent

3,776 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU81
UUC137
Leu L15.4%
UUA142
UUG15
CUU55
CUC63
CUA292
CUG16
Ile I8.5%
AUU141
AUC179
Met M6.6%
AUA217
AUG34
Val V4.1%
GUU37
GUC25
GUA80
GUG11
Ser S7.5%
UCU38
UCC51
UCA138
UCG6
AGU12
AGC40
Pro P5.5%
CCU23
CCC28
CCA151
CCG5
Thr T10.4%
ACU61
ACC113
ACA213
ACG5
Ala A5.8%
GCU42
GCC91
GCA84
GCG3
Tyr Y3.3%
UAU61
UAC62
His H3.0%
CAU44
CAC68
Gln Q2.7%
CAA98
CAG4
Asn N4.0%
AAU45
AAC106
Lys K2.4%
AAA86
AAG3
Asp D1.6%
GAU25
GAC37
Glu E2.2%
GAA81
GAG3
Cys C0.8%
UGU11
UGC20
Trp W2.8%
UGA95
UGG10
Arg R1.9%
CGU5
CGC15
CGA48
CGG3
Gly G5.5%
GGU40
GGC50
GGA87
GGG31
Stop 0.2%
UAA7
UAG1
AGA1
AGG0

Genome map

38 annotated features in NC_012414.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17373 bp+–
12S rRNARibosomal RNA741,049976 bp+41.2%
tRNA-ValTransfer RNA1,0501,11970 bp+–
16S rRNARibosomal RNA1,1202,6901,571 bp+38.6%
tRNA-Leu (UUR)Transfer RNA2,6972,77377 bp+–
ND1Protein-coding gene2,7743,742969 bp+38.1%
tRNA-IleTransfer RNA3,7433,81371 bp+–
tRNA-GlnTransfer RNA3,8133,88371 bp−–
tRNA-MetTransfer RNA3,8833,95169 bp+–
ND2Protein-coding gene3,9524,9871,036 bp+35.4%
tRNA-TrpTransfer RNA4,9885,06477 bp+–
tRNA-AlaTransfer RNA5,0685,13669 bp−–
tRNA-AsnTransfer RNA5,1385,21073 bp−–
tRNA-CysTransfer RNA5,2445,31067 bp−–
tRNA-TyrTransfer RNA5,3105,37869 bp−–
COX1Protein-coding gene5,3806,9151,536 bp+41.3%
tRNA-Ser (UCN)Transfer RNA6,9236,99371 bp−–
tRNA-AspTransfer RNA6,9947,06269 bp+–
COX2Protein-coding gene7,0637,749687 bp+38.1%
tRNA-LysTransfer RNA7,7527,82473 bp+–
ATP8Protein-coding gene7,8277,991165 bp+35.2%
ATP6Protein-coding gene7,9828,665684 bp+36.1%
COX3Protein-coding gene8,6669,449784 bp+42.4%
tRNA-GlyTransfer RNA9,4509,51869 bp+–
ND3Protein-coding gene9,5199,868350 bp+40.1%
tRNA-ArgTransfer RNA9,8699,93769 bp+–
ND4LProtein-coding gene9,93810,234297 bp+39.4%
ND4Protein-coding gene10,22811,6081,381 bp+38.2%
tRNA-HisTransfer RNA11,60911,67870 bp+–
tRNA-Ser (AGY)Transfer RNA11,67911,74062 bp+–
tRNA-Leu (CUN)Transfer RNA11,74011,81172 bp+–
ND5Protein-coding gene11,81213,5901,779 bp+39.5%
ND6Protein-coding gene13,58614,110525 bp−36.6%
tRNA-GluTransfer RNA14,11114,17969 bp−–
CYTBProtein-coding gene14,18315,3221,140 bp+39.7%
tRNA-ThrTransfer RNA15,32915,40375 bp+–
tRNA-ProTransfer RNA15,41415,48269 bp−–
D-loopControl region15,48316,4901,008 bp–33.3%

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