Lophius americanus
Goosefish
GC content
47.41%
Whole genome
Non-coding
875 bp
D-loop 814 bp
Where Goosefish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Goosefish has the 441st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,479 bp
- GC skew (G − C) / (G + C)
- −0.268
- AT skew (A − T) / (A + T)
- +0.053
Life history
- Maximum lifespan
- 30 years
- Adult weight
- 12.4 kg
Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04062)
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,479 bp
Protein-coding11,417 bp
12S rRNA949 bp
16S rRNA1,686 bp
All tRNA1,552 bp
D-loop814 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.26% | −0.359 | −0.031 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 51.20% | −0.443 | −0.008 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 47.20% | −0.230 | −0.060 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.45% | −0.246 | +0.076 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.64% | −0.520 | +0.204 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 48.17% | −0.416 | −0.073 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 50.83% | −0.308 | −0.057 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.00% | −0.292 | −0.111 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.85% | −0.351 | −0.063 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.01% | −0.324 | −0.006 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.55% | −0.329 | +0.015 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 50.19% | −0.359 | +0.508 | |||||
| CYTBCytochrome b | 1,152 bp | 46.88% | −0.319 | −0.056 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 47.73% | −0.113 | +0.202 | |||||
| 16S rRNA16S ribosomal RNA | 1,686 bp | 44.84% | −0.087 | +0.247 | |||||
| D-loopControl region (D-loop) | 814 bp | 39.07% | −0.120 | +0.024 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU103
UUC122
Leu L18.0%
UUA95
UUG39
CUU142
CUC161
CUA191
CUG57
Ile I6.8%
AUU114
AUC145
Met M3.9%
AUA81
AUG69
Val V5.6%
GUU56
GUC55
GUA73
GUG31
Ser S6.2%
UCU37
UCC77
UCA52
UCG12
AGU16
AGC41
Pro P5.8%
CCU21
CCC142
CCA46
CCG13
Thr T7.9%
ACU53
ACC122
ACA109
ACG16
Ala A9.6%
GCU54
GCC183
GCA115
GCG14
Tyr Y2.8%
UAU33
UAC75
His H2.8%
CAU26
CAC82
Gln Q2.6%
CAA82
CAG16
Asn N2.9%
AAU25
AAC84
Lys K2.0%
AAA55
AAG22
Asp D1.9%
GAU20
GAC53
Glu E2.6%
GAA79
GAG21
Cys C0.6%
UGU4
UGC20
Trp W3.1%
UGA89
UGG30
Arg R2.0%
CGU9
CGC14
CGA45
CGG10
Gly G6.6%
GGU30
GGC88
GGA75
GGG59
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_004380.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 70 | 70 bp | + | – |
| 12S rRNA | Ribosomal RNA | 71 | 1,019 | 949 bp | + | 47.7% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,777 | 1,686 bp | + | 44.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,778 | 2,851 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,852 | 3,826 | 975 bp | + | 50.3% |
| tRNA-Ile | Transfer RNA | 3,829 | 3,897 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,897 | 3,967 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,967 | 4,035 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,036 | 5,080 | 1,045 bp | + | 51.2% |
| tRNA-Trp | Transfer RNA | 5,081 | 5,151 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,153 | 5,221 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,223 | 5,295 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,333 | 5,399 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,400 | 5,466 | 67 bp | − | – |
| COX1 | Protein-coding gene | 5,468 | 7,018 | 1,551 bp | + | 47.2% |
| tRNA-Ser (UCN) | Transfer RNA | 7,019 | 7,090 | 72 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,094 | 7,165 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,170 | 7,860 | 691 bp | + | 46.5% |
| tRNA-Lys | Transfer RNA | 7,861 | 7,935 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,937 | 8,104 | 168 bp | + | 44.6% |
| ATP6 | Protein-coding gene | 8,095 | 8,777 | 683 bp | + | 48.2% |
| COX3 | Protein-coding gene | 8,778 | 9,562 | 785 bp | + | 50.8% |
| tRNA-Gly | Transfer RNA | 9,563 | 9,634 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,635 | 9,983 | 349 bp | + | 51.0% |
| tRNA-Arg | Transfer RNA | 9,984 | 10,054 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,055 | 10,351 | 297 bp | + | 51.9% |
| ND4 | Protein-coding gene | 10,345 | 11,725 | 1,381 bp | + | 48.0% |
| tRNA-His | Transfer RNA | 11,726 | 11,794 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,795 | 11,862 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,869 | 11,941 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,942 | 13,780 | 1,839 bp | + | 46.6% |
| ND6 | Protein-coding gene | 13,777 | 14,298 | 522 bp | − | 50.2% |
| tRNA-Glu | Transfer RNA | 14,299 | 14,367 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,372 | 15,523 | 1,152 bp | + | 46.9% |
| tRNA-Thr | Transfer RNA | 15,525 | 15,596 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,596 | 15,665 | 70 bp | − | – |
| D-loop | Control region | 15,666 | 16,479 | 814 bp | – | 39.1% |