Lota lota

Burbot

Maximum lifespan

20 yr

AnAge record

mtDNA size

16,527 bp

RefSeq NC_004379.1

GC content

44.04%

Whole genome

Non-coding

969 bp

D-loop 803 bp

Where Burbot sits among 2,335 species

Whole-genome GC content against maximum lifespan. Burbot has the 892nd longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,527 bp

GC skew (G − C) / (G + C): −0.259
AT skew (A − T) / (A + T): +0.014

Life history

Maximum lifespan: 20 years
Adult weight: 18.7 kg
Female sexual maturity: 4 years
Male sexual maturity: 3 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04026)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,527 bp

Protein-coding11,405 bp

12S rRNA946 bp

16S rRNA1,667 bp

All tRNA1,540 bp

D-loop803 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Lota lota genes

ND1NADH dehydrogenase subunit 1	975 bp	24.7%	30.1%	15.5%	29.7%	45.23%	−0.315	−0.097
ND2NADH dehydrogenase subunit 2	1,045 bp	27.1%	29.0%	12.6%	31.3%	43.92%	−0.425	−0.034
COX1Cytochrome c oxidase subunit I	1,551 bp	25.3%	29.7%	18.1%	27.0%	45.00%	−0.198	−0.081
COX2Cytochrome c oxidase subunit II	691 bp	28.7%	28.1%	15.8%	27.5%	43.27%	−0.271	+0.010
ATP8ATP synthase F0 subunit 8	168 bp	32.1%	25.6%	8.9%	33.3%	42.26%	−0.577	+0.113
ATP6ATP synthase F0 subunit 6	683 bp	25.6%	30.6%	12.9%	30.9%	43.78%	−0.411	−0.089
COX3Cytochrome c oxidase subunit III	785 bp	24.6%	29.0%	16.8%	29.6%	46.37%	−0.275	−0.083
ND3NADH dehydrogenase subunit 3	349 bp	23.2%	31.2%	13.8%	31.8%	45.56%	−0.396	−0.147
ND4LNADH dehydrogenase subunit 4L	297 bp	25.6%	27.9%	13.5%	33.0%	46.47%	−0.420	−0.044
ND4NADH dehydrogenase subunit 4	1,381 bp	26.1%	28.4%	14.8%	30.7%	45.47%	−0.350	−0.041
ND5NADH dehydrogenase subunit 5	1,839 bp	29.3%	29.2%	13.6%	27.9%	41.54%	−0.346	+0.001
ND6NADH dehydrogenase subunit 6	522 bp	38.7%	15.3%	14.2%	31.8%	45.98%	−0.383	+0.433
CYTBCytochrome b	1,141 bp	26.4%	31.3%	14.5%	27.9%	42.33%	−0.317	−0.085
12S rRNA12S ribosomal RNA	946 bp	31.8%	22.2%	22.2%	23.8%	45.98%	−0.034	+0.178
16S rRNA16S ribosomal RNA	1,667 bp	33.3%	23.0%	20.2%	23.5%	43.67%	−0.077	+0.182
D-loopControl region (D-loop)	803 bp	29.8%	33.6%	14.9%	21.7%	36.61%	−0.184	−0.061

Codon usage

Counts per codon, darker is more frequent

Gene

3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU125

UUC105

Leu L17.3%

UUA132

UUG20

CUU159

CUC127

CUA180

CUG42

Ile I6.8%

AUU161

AUC97

Met M4.3%

AUA121

AUG43

Val V6.1%

GUU75

GUC50

GUA94

GUG15

Ser S6.8%

UCU51

UCC70

UCA72

UCG6

AGU20

AGC39

Pro P5.7%

CCU69

CCC98

CCA45

CCG5

Thr T7.6%

ACU61

ACC103

ACA118

ACG7

Ala A9.3%

GCU75

GCC157

GCA113

GCG8

Tyr Y2.9%

UAU57

UAC54

His H2.8%

CAU34

CAC71

Gln Q2.5%

CAA85

CAG11

Asn N3.1%

AAU52

AAC67

Lys K1.8%

AAA60

AAG10

Asp D2.0%

GAU22

GAC53

Glu E2.6%

GAA78

GAG21

Cys C0.7%

UGU11

UGC15

Trp W3.2%

UGA103

UGG17

Arg R1.9%

CGU11

CGC14

CGA40

CGG9

Gly G6.4%

GGU32

GGC85

GGA85

GGG40

Stop 0.2%

UAA5

UAG0

AGA0

AGG1

Genome map

38 annotated features in NC_004379.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (44.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Lota lota (NC_004379.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,014	946 bp	+	46.0%
tRNA-Val	Transfer RNA	1,015	1,086	72 bp	+	–
16S rRNA	Ribosomal RNA	1,087	2,753	1,667 bp	+	43.7%
tRNA-Leu (UUR)	Transfer RNA	2,754	2,827	74 bp	+	–
ND1	Protein-coding gene	2,828	3,802	975 bp	+	45.2%
tRNA-Ile	Transfer RNA	3,804	3,873	70 bp	+	–
tRNA-Gln	Transfer RNA	3,873	3,943	71 bp	−	–
tRNA-Met	Transfer RNA	3,943	4,012	70 bp	+	–
ND2	Protein-coding gene	4,013	5,057	1,045 bp	+	43.9%
tRNA-Trp	Transfer RNA	5,058	5,127	70 bp	+	–
tRNA-Ala	Transfer RNA	5,129	5,197	69 bp	−	–
tRNA-Asn	Transfer RNA	5,200	5,272	73 bp	−	–
tRNA-Cys	Transfer RNA	5,306	5,369	64 bp	−	–
tRNA-Tyr	Transfer RNA	5,370	5,436	67 bp	−	–
COX1	Protein-coding gene	5,438	6,988	1,551 bp	+	45.0%
tRNA-Ser (UCN)	Transfer RNA	6,991	7,061	71 bp	−	–
tRNA-Asp	Transfer RNA	7,065	7,132	68 bp	+	–
COX2	Protein-coding gene	7,146	7,836	691 bp	+	43.3%
tRNA-Lys	Transfer RNA	7,837	7,911	75 bp	+	–
ATP8	Protein-coding gene	7,913	8,080	168 bp	+	42.3%
ATP6	Protein-coding gene	8,071	8,753	683 bp	+	43.8%
COX3	Protein-coding gene	8,754	9,538	785 bp	+	46.4%
tRNA-Gly	Transfer RNA	9,539	9,608	70 bp	+	–
ND3	Protein-coding gene	9,609	9,957	349 bp	+	45.6%
tRNA-Arg	Transfer RNA	9,958	10,026	69 bp	+	–
ND4L	Protein-coding gene	10,027	10,323	297 bp	+	46.5%
ND4	Protein-coding gene	10,317	11,697	1,381 bp	+	45.5%
tRNA-His	Transfer RNA	11,698	11,766	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,767	11,834	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,837	11,909	73 bp	+	–
ND5	Protein-coding gene	11,910	13,748	1,839 bp	+	41.5%
ND6	Protein-coding gene	13,744	14,265	522 bp	−	46.0%
tRNA-Glu	Transfer RNA	14,266	14,334	69 bp	−	–
CYTB	Protein-coding gene	14,339	15,479	1,141 bp	+	42.3%
tRNA-Thr	Transfer RNA	15,480	15,551	72 bp	+	–
tRNA-Pro	Transfer RNA	15,655	15,724	70 bp	−	–
D-loop	Control region	15,725	16,527	803 bp	–	36.6%