Lumpenus sagitta
Snake prickleback
GC content
45.75%
Whole genome
Non-coding
923 bp
Including the D-loop
Where Snake prickleback sits among 2,335 species
Whole-genome GC content against maximum lifespan. Snake prickleback has the 1,772nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,526 bp
- GC skew (G − C) / (G + C)
- −0.236
- AT skew (A − T) / (A + T)
- −0.009
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,526 bp
Protein-coding11,408 bp
12S rRNA948 bp
16S rRNA1,695 bp
All tRNA1,552 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.00% | −0.286 | −0.148 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 48.33% | −0.372 | −0.020 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 46.36% | −0.188 | −0.132 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.84% | −0.223 | −0.023 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 45.24% | −0.447 | +0.087 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.54% | −0.395 | −0.135 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.64% | −0.289 | −0.046 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.85% | −0.257 | −0.209 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.50% | −0.306 | −0.147 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 44.82% | −0.296 | −0.076 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 44.10% | −0.327 | −0.064 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.02% | −0.387 | +0.394 | |||||
| CYTBCytochrome b | 1,141 bp | 47.68% | −0.327 | −0.106 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 48.31% | −0.087 | +0.163 | |||||
| 16S rRNA16S ribosomal RNA | 1,695 bp | 45.25% | −0.069 | +0.179 |
Codon usage
Counts per codon, darker is more frequent3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU127
UUC103
Leu L17.0%
UUA104
UUG19
CUU183
CUC134
CUA155
CUG53
Ile I6.8%
AUU168
AUC90
Met M4.1%
AUA88
AUG69
Val V6.3%
GUU88
GUC58
GUA77
GUG17
Ser S6.5%
UCU55
UCC74
UCA55
UCG10
AGU18
AGC35
Pro P5.8%
CCU72
CCC89
CCA45
CCG13
Thr T7.7%
ACU60
ACC126
ACA92
ACG16
Ala A9.2%
GCU77
GCC155
GCA102
GCG16
Tyr Y3.0%
UAU35
UAC78
His H2.8%
CAU38
CAC68
Gln Q2.7%
CAA79
CAG24
Asn N3.0%
AAU53
AAC61
Lys K1.9%
AAA60
AAG12
Asp D2.1%
GAU26
GAC53
Glu E2.5%
GAA62
GAG33
Cys C0.7%
UGU8
UGC18
Trp W3.2%
UGA95
UGG25
Arg R2.0%
CGU8
CGC16
CGA39
CGG13
Gly G6.6%
GGU35
GGC84
GGA74
GGG60
Stop 0.2%
UAA8
UAG0
AGA0
AGG0
Genome map
37 annotated features in NC_082807.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 48.3% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,783 | 1,695 bp | + | 45.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,857 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,858 | 3,832 | 975 bp | + | 48.0% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,906 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,906 | 3,976 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,091 | 1,047 bp | + | 48.3% |
| tRNA-Trp | Transfer RNA | 5,092 | 5,162 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,164 | 5,232 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,234 | 5,306 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,344 | 5,409 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,410 | 5,480 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,482 | 7,032 | 1,551 bp | + | 46.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,033 | 7,103 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,107 | 7,179 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,194 | 7,884 | 691 bp | + | 42.8% |
| tRNA-Lys | Transfer RNA | 7,885 | 7,958 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,960 | 8,127 | 168 bp | + | 45.2% |
| ATP6 | Protein-coding gene | 8,118 | 8,801 | 684 bp | + | 42.5% |
| COX3 | Protein-coding gene | 8,801 | 9,585 | 785 bp | + | 47.6% |
| tRNA-Gly | Transfer RNA | 9,586 | 9,657 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,658 | 10,006 | 349 bp | + | 47.9% |
| tRNA-Arg | Transfer RNA | 10,007 | 10,075 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,076 | 10,372 | 297 bp | + | 49.5% |
| ND4 | Protein-coding gene | 10,366 | 11,746 | 1,381 bp | + | 44.8% |
| tRNA-His | Transfer RNA | 11,747 | 11,815 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,816 | 11,883 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,888 | 11,960 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,961 | 13,799 | 1,839 bp | + | 44.1% |
| ND6 | Protein-coding gene | 13,796 | 14,317 | 522 bp | − | 45.0% |
| tRNA-Glu | Transfer RNA | 14,318 | 14,386 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,392 | 15,532 | 1,141 bp | + | 47.7% |
| tRNA-Thr | Transfer RNA | 15,533 | 15,605 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,605 | 15,674 | 70 bp | − | – |