Lutjanus erythropterus
Crimson snapper
GC content
45.91%
Whole genome
Non-coding
905 bp
D-loop 837 bp
Where Crimson snapper sits among 2,335 species
Whole-genome GC content against maximum lifespan. Crimson snapper has the 1,756th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,509 bp
- GC skew (G − C) / (G + C)
- −0.295
- AT skew (A − T) / (A + T)
- +0.041
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,509 bp
Protein-coding11,407 bp
12S rRNA948 bp
16S rRNA1,695 bp
All tRNA1,554 bp
D-loop837 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.18% | −0.387 | −0.037 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.57% | −0.508 | +0.071 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 44.55% | −0.175 | −0.086 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.71% | −0.278 | +0.003 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 43.45% | −0.562 | +0.095 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.61% | −0.436 | −0.059 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.64% | −0.305 | −0.032 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.71% | −0.447 | −0.229 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.85% | −0.403 | −0.077 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.56% | −0.362 | −0.011 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.02% | −0.408 | +0.009 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.467 | +0.489 | |||||
| CYTBCytochrome b | 1,141 bp | 46.28% | −0.337 | −0.106 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 47.15% | −0.083 | +0.162 | |||||
| 16S rRNA16S ribosomal RNA | 1,695 bp | 47.61% | −0.150 | +0.255 | |||||
| D-loopControl region (D-loop) | 837 bp | 39.55% | −0.184 | +0.059 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU91
UUC144
Leu L17.6%
UUA79
UUG14
CUU172
CUC159
CUA199
CUG48
Ile I6.9%
AUU143
AUC121
Met M3.9%
AUA75
AUG74
Val V5.8%
GUU76
GUC63
GUA65
GUG18
Ser S6.2%
UCU49
UCC76
UCA53
UCG4
AGU11
AGC43
Pro P5.9%
CCU70
CCC88
CCA53
CCG13
Thr T7.9%
ACU57
ACC117
ACA116
ACG12
Ala A9.2%
GCU64
GCC155
GCA118
GCG12
Tyr Y2.9%
UAU40
UAC71
His H2.8%
CAU32
CAC73
Gln Q2.6%
CAA92
CAG8
Asn N3.2%
AAU37
AAC83
Lys K1.9%
AAA67
AAG7
Asp D2.0%
GAU19
GAC56
Glu E2.7%
GAA81
GAG20
Cys C0.6%
UGU6
UGC18
Trp W3.2%
UGA110
UGG10
Arg R2.0%
CGU17
CGC10
CGA40
CGG9
Gly G6.4%
GGU34
GGC79
GGA93
GGG36
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_031331.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 47.2% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,783 | 1,695 bp | + | 47.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,784 | 2,857 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,858 | 3,832 | 975 bp | + | 47.2% |
| tRNA-Ile | Transfer RNA | 3,837 | 3,906 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,906 | 3,976 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,976 | 4,044 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,045 | 5,090 | 1,046 bp | + | 48.6% |
| tRNA-Trp | Transfer RNA | 5,091 | 5,162 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,164 | 5,232 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,234 | 5,306 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,345 | 5,411 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,412 | 5,481 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,483 | 7,033 | 1,551 bp | + | 44.6% |
| tRNA-Ser (UCN) | Transfer RNA | 7,035 | 7,105 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,109 | 7,180 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,188 | 7,878 | 691 bp | + | 43.7% |
| tRNA-Lys | Transfer RNA | 7,879 | 7,954 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,956 | 8,123 | 168 bp | + | 43.5% |
| ATP6 | Protein-coding gene | 8,114 | 8,797 | 684 bp | + | 45.6% |
| COX3 | Protein-coding gene | 8,797 | 9,581 | 785 bp | + | 47.6% |
| tRNA-Gly | Transfer RNA | 9,582 | 9,653 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,654 | 10,002 | 349 bp | + | 48.7% |
| tRNA-Arg | Transfer RNA | 10,003 | 10,071 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,072 | 10,368 | 297 bp | + | 51.9% |
| ND4 | Protein-coding gene | 10,362 | 11,742 | 1,381 bp | + | 46.6% |
| tRNA-His | Transfer RNA | 11,743 | 11,811 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,812 | 11,879 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,885 | 11,957 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,958 | 13,796 | 1,839 bp | + | 45.0% |
| ND6 | Protein-coding gene | 13,793 | 14,314 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 14,315 | 14,383 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,389 | 15,529 | 1,141 bp | + | 46.3% |
| tRNA-Thr | Transfer RNA | 15,530 | 15,601 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,603 | 15,672 | 70 bp | − | – |
| D-loop | Control region | 15,673 | 16,509 | 837 bp | – | 39.6% |